Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b08f
         (627 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g54440.1 68416.m06023 glycoside hydrolase family 2 protein si...    30   1.4  
At4g19160.3 68417.m02827 expressed protein                             29   1.9  
At4g19160.2 68417.m02826 expressed protein                             29   1.9  
At4g12220.1 68417.m01939 hypothetical protein                          27   7.7  
At1g68070.1 68414.m07776 zinc finger (C3HC4-type RING finger) fa...    27   7.7  
At1g67500.1 68414.m07688 DNA polymerase family B protein similar...    27   7.7  

>At3g54440.1 68416.m06023 glycoside hydrolase family 2 protein
           similar to beta-galactosidase (lactase) from Alteromonas
           haloplanktis [SP|P81650]; contains Pfam glycoside
           hydrolase domains PF02836, PF02837, PF02929, PF02930
          Length = 1107

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/20 (65%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = +2

Query: 236 RWRD-SQLRIQDDWWDSGIH 292
           RW D S L  QD WW SGIH
Sbjct: 231 RWSDGSYLEDQDHWWLSGIH 250


>At4g19160.3 68417.m02827 expressed protein
          Length = 454

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 195 RRSCRWTSAELKSVFAKTECAAGTPYHLF 109
           RR C WT  E K  F + + A+ + Y LF
Sbjct: 47  RRGCSWTGIEKKIPFPRKKTASASAYPLF 75


>At4g19160.2 68417.m02826 expressed protein
          Length = 453

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 195 RRSCRWTSAELKSVFAKTECAAGTPYHLF 109
           RR C WT  E K  F + + A+ + Y LF
Sbjct: 47  RRGCSWTGIEKKIPFPRKKTASASAYPLF 75


>At4g12220.1 68417.m01939 hypothetical protein
          Length = 163

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 558 GHQTGRATSATNEMFFNSALC-CTHNYFMAFIQKERVLY 445
           GHQT R+T A+   F    LC  +H++  + ++   V Y
Sbjct: 42  GHQTSRSTPASPSFFDTINLCSSSHHHIRSLLRSRFVSY 80


>At1g68070.1 68414.m07776 zinc finger (C3HC4-type RING finger)
           family protein very low similarity to RING-H2 finger
           protein RHG1a [Arabidopsis thaliana] GI:3822225;
           contains Pfam profile: PF00097 zinc finger, C3HC4 type
           (RING finger)
          Length = 343

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 518 CSSTALSAVHIIILWLLFRKREFYTR 441
           C       VH++++WL FRKR   +R
Sbjct: 104 CGYAIQCLVHVVLVWLEFRKRNARSR 129


>At1g67500.1 68414.m07688 DNA polymerase family B protein similar to
           SP|Q61493 DNA polymerase zeta catalytic subunit (EC
           2.7.7.7) {Mus musculus}; contains Pfam profile PF00136:
           DNA polymerase family B
          Length = 1890

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/59 (23%), Positives = 29/59 (49%)
 Frame = -3

Query: 607 HPDVGAATLTSRVQRVGSPDWEGNICNE*DVLQQRSLLYT*LFYGFYSERESFIHGYLN 431
           H  V  +TL   ++   +   +GN  ++   +    ++    FYG++S  E+F+  YL+
Sbjct: 82  HKGVDGSTLALSLELEKALKLKGNAASKRQHIHDCEIVRAKKFYGYHSTEEAFVKIYLS 140


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,509,032
Number of Sequences: 28952
Number of extensions: 263460
Number of successful extensions: 580
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)