Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_E12
(507 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g09800.1 68417.m01609 40S ribosomal protein S18 (RPS18C) 220 5e-58
At1g34030.1 68414.m04219 40S ribosomal protein S18 (RPS18B) simi... 220 5e-58
At1g22780.1 68414.m02846 40S ribosomal protein S18 (RPS18A) Matc... 220 5e-58
At5g14320.1 68418.m01674 30S ribosomal protein S13, chloroplast ... 36 0.012
At1g77750.1 68414.m09052 30S ribosomal protein S13, chloroplast,... 29 1.4
At4g38160.2 68417.m05388 mitochondrial transcription termination... 28 4.2
At4g10960.1 68417.m01781 UDP-glucose 4-epimerase, putative / UDP... 28 4.2
At3g26618.1 68416.m03325 eukaryotic release factor 1 family prot... 28 4.2
At1g12920.1 68414.m01500 eukaryotic release factor 1 family prot... 28 4.2
At5g47880.1 68418.m05915 eukaryotic peptide chain release factor... 27 5.5
At4g38160.1 68417.m05387 mitochondrial transcription termination... 27 9.6
>At4g09800.1 68417.m01609 40S ribosomal protein S18 (RPS18C)
Length = 152
Score = 220 bits (537), Expect = 5e-58
Identities = 95/137 (69%), Positives = 121/137 (88%)
Frame = +2
Query: 59 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 238
MSLV ++FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE +
Sbjct: 1 MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60
Query: 239 EXEVEKIITIMSNPXQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREXLERLKKIRAH 418
E++ ++TI++NP Q+KIPDWFLNRQKD DGKYSQ+ S+ LD KLR+ LERLKKIR H
Sbjct: 61 AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
Query: 419 RGMRHYWGLRVRGQHTK 469
RG+RHYWGLRVRGQHTK
Sbjct: 121 RGLRHYWGLRVRGQHTK 137
>At1g34030.1 68414.m04219 40S ribosomal protein S18 (RPS18B) similar
to ribosomal protein S18 GI:38422 from [Homo sapiens]
Length = 152
Score = 220 bits (537), Expect = 5e-58
Identities = 95/137 (69%), Positives = 121/137 (88%)
Frame = +2
Query: 59 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 238
MSLV ++FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE +
Sbjct: 1 MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60
Query: 239 EXEVEKIITIMSNPXQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREXLERLKKIRAH 418
E++ ++TI++NP Q+KIPDWFLNRQKD DGKYSQ+ S+ LD KLR+ LERLKKIR H
Sbjct: 61 AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
Query: 419 RGMRHYWGLRVRGQHTK 469
RG+RHYWGLRVRGQHTK
Sbjct: 121 RGLRHYWGLRVRGQHTK 137
>At1g22780.1 68414.m02846 40S ribosomal protein S18 (RPS18A) Match
to ribosomal S18 gene mRNA gb|Z28701, DNA gb|Z23165 from
A. thaliana. ESTs gb|T21121, gb|Z17755, gb|R64776 and
gb|R30430 come from this gene
Length = 152
Score = 220 bits (537), Expect = 5e-58
Identities = 95/137 (69%), Positives = 121/137 (88%)
Frame = +2
Query: 59 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 238
MSLV ++FQHILR++NTN+DGK+K+MFA+T+IKG+GRR +NIV KKAD+D++KRAGE +
Sbjct: 1 MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELS 60
Query: 239 EXEVEKIITIMSNPXQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREXLERLKKIRAH 418
E++ ++TI++NP Q+KIPDWFLNRQKD DGKYSQ+ S+ LD KLR+ LERLKKIR H
Sbjct: 61 AAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNH 120
Query: 419 RGMRHYWGLRVRGQHTK 469
RG+RHYWGLRVRGQHTK
Sbjct: 121 RGLRHYWGLRVRGQHTK 137
>At5g14320.1 68418.m01674 30S ribosomal protein S13, chloroplast
(CS13) ribosomal protein S13 precursor, chloroplast
Arabidopsis thaliana, PIR:S59594; identical to cDNA
ribosomal protein S13 GI:1515106
Length = 169
Score = 36.3 bits (80), Expect = 0.012
Identities = 15/27 (55%), Positives = 21/27 (77%)
Frame = +2
Query: 389 LERLKKIRAHRGMRHYWGLRVRGQHTK 469
++RLK+I+ +RG+RH GL RGQ TK
Sbjct: 122 IKRLKEIQCYRGVRHIQGLPCRGQRTK 148
>At1g77750.1 68414.m09052 30S ribosomal protein S13, chloroplast,
putative similar to putative 30S ribosomal protein S13,
chloroplast precursor GB:P42732 [Arabidopsis thaliana]
Length = 154
Score = 29.5 bits (63), Expect = 1.4
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 365 LDSKLREXLERLKKIRAHRGMRHYWGLRVRGQHT 466
L ++ ++RL ++ +RG RH GL RGQ T
Sbjct: 98 LRRRVGSEIQRLVEVDCYRGSRHRHGLPCRGQRT 131
>At4g38160.2 68417.m05388 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 363
Score = 27.9 bits (59), Expect = 4.2
Identities = 27/123 (21%), Positives = 49/123 (39%), Gaps = 1/123 (0%)
Frame = +2
Query: 98 RIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEXEVEKIITIMSN 277
+I+ N D ++ F + I + Y I++K L R V+ + M
Sbjct: 222 KILKPNYDYLKECGFGDSQIATMVTGYPQILIKSVKNSLQPRI----RFLVQVMGRGMDE 277
Query: 278 PXQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREXLE-RLKKIRAHRGMRHYWGLRVR 454
Y P++F + K V+ ++ + +N+D LRE L+ KK G +
Sbjct: 278 VASY--PEFFHHGLKKKVESRFKLVKKNNIDCSLREMLDCNTKKFHEKFGFSEVFNCNQN 335
Query: 455 GQH 463
G +
Sbjct: 336 GMY 338
>At4g10960.1 68417.m01781 UDP-glucose 4-epimerase, putative /
UDP-galactose 4-epimerase, putative / Galactowaldenase,
putative similar to UDP-galactose 4-epimerase from
Arabidopsis thaliana SP|Q42605, Cyamopsis tetragonoloba
GI:3021357 [AJ005082]
Length = 351
Score = 27.9 bits (59), Expect = 4.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 335 GKYSQLTSSNLDSKLREXLERLKKIRAHRGMR 430
G YS + NLD+ L+R+KK+ A G R
Sbjct: 26 GGYSVVVVDNLDNSSAVSLQRVKKLAAEHGER 57
>At3g26618.1 68416.m03325 eukaryotic release factor 1 family protein
/ eRF1 family protein contains Pfam profiles: PF03463
eRF1 domain 1, PF03464 eRF1 domain 2, PF03465 eRF1
domain 3
Length = 435
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 81 LSGMTSDILVKFLTNVPKHNSRGNGKA 1
LSG T ++L KF ++PK + RG A
Sbjct: 159 LSGNTREVLHKFTVDLPKKHGRGGQSA 185
>At1g12920.1 68414.m01500 eukaryotic release factor 1 family protein
/ eRF1 family protein contains Pfam profiles: PF03463
eRF1 domain 1, PF03464 eRF1 domain 2, PF03465 eRF1
domain 3
Length = 434
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 81 LSGMTSDILVKFLTNVPKHNSRGNGKA 1
LSG T ++L KF ++PK + RG A
Sbjct: 158 LSGNTREVLHKFTVDLPKKHGRGGQSA 184
>At5g47880.1 68418.m05915 eukaryotic peptide chain release factor
subunit 1-1 (ERF1-1) identical to SP|Q39097 Eukaryotic
peptide chain release factor subunit 1-1 (eRF1-1)
(Eukaryotic release factor 1-1) (Omnipotent suppressor
protein 1 homolog 1) (SUP1 homolog 1) {Arabidopsis
thaliana}, eukaryotic release factor 1 homolog
GI:1155261 from [Arabidopsis thaliana]; contains Pfam
profiles: PF03463 eRF1 domain 1, PF03464 eRF1 domain 2,
PF03465 eRF1 domain 3
Length = 436
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 81 LSGMTSDILVKFLTNVPKHNSRGNGKA 1
LSG T ++L KF ++PK + RG A
Sbjct: 160 LSGNTREVLHKFSVDLPKKHGRGGQSA 186
>At4g38160.1 68417.m05387 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 333
Score = 26.6 bits (56), Expect = 9.6
Identities = 23/99 (23%), Positives = 43/99 (43%)
Frame = +2
Query: 98 RIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEXEVEKIITIMSN 277
+I+ N D ++ F + I + Y I++K L R V+ + M
Sbjct: 222 KILKPNYDYLKECGFGDSQIATMVTGYPQILIKSVKNSLQPRI----RFLVQVMGRGMDE 277
Query: 278 PXQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREXLE 394
Y P++F + K V+ ++ + +N+D LRE L+
Sbjct: 278 VASY--PEFFHHGLKKKVESRFKLVKKNNIDCSLREMLD 314
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,112,462
Number of Sequences: 28952
Number of extensions: 219041
Number of successful extensions: 556
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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