Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P01_F_E11
(654 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 29 3.6
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 29 3.6
At5g13680.1 68418.m01593 IKI3 family protein weak similarity to ... 28 4.7
At2g22720.3 68415.m02692 expressed protein 28 4.7
At2g22720.2 68415.m02691 expressed protein 28 4.7
At2g22720.1 68415.m02693 expressed protein 28 4.7
At2g35510.1 68415.m04349 WWE domain-containing protein contains ... 27 8.2
At1g18620.1 68414.m02321 expressed protein 27 8.2
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = -1
Query: 522 GHSNKACRLGPQ*WRXGAPSERRRNYPSPGSTGSRPGNSSHRNSPRK 382
GH + CR G R +PS RRR P G R+ PR+
Sbjct: 98 GHFARECRRGRGSVRRRSPSPRRRRSPDYGYARRSISPRGRRSPPRR 144
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = -1
Query: 522 GHSNKACRLGPQ*WRXGAPSERRRNYPSPGSTGSRPGNSSHRNSPRK 382
GH + CR G R +PS RRR P G R+ PR+
Sbjct: 98 GHFARECRRGRGSVRRRSPSPRRRRSPDYGYARRSISPRGRRSPPRR 144
>At5g13680.1 68418.m01593 IKI3 family protein weak similarity to
SP|O95163 IkappaB kinase complex-associated protein (IKK
complex-associated protein) (p150) {Homo sapiens};
contains Pfam profile PF04762: IKI3 family
Length = 1319
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -3
Query: 643 LPEPQVVSHSDHEPQLETTQSITPQVSRKSGQQSPNFKQAWS 518
L E +VV H DH P T ++ ++ +SP AW+
Sbjct: 491 LQEVEVVCHEDHVPDQVTCSGFKASITFQTLLESPVLALAWN 532
>At2g22720.3 68415.m02692 expressed protein
Length = 569
Score = 28.3 bits (60), Expect = 4.7
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = -1
Query: 576 LRKSPGSRGNNLPISSKRGHSNKACRLGPQ*WRXGAPSERRRNYPSPGSTGSRPGNSSHR 397
+++ P S G+ P SS S + G Q R G+ + R+ PGS + G S++R
Sbjct: 301 MQQRPASSGSQRPASSG---SQRPASSGSQ--RPGSSTNRQAPMRPPGSGSTMNGQSANR 355
Query: 396 N 394
N
Sbjct: 356 N 356
>At2g22720.2 68415.m02691 expressed protein
Length = 672
Score = 28.3 bits (60), Expect = 4.7
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = -1
Query: 576 LRKSPGSRGNNLPISSKRGHSNKACRLGPQ*WRXGAPSERRRNYPSPGSTGSRPGNSSHR 397
+++ P S G+ P SS S + G Q R G+ + R+ PGS + G S++R
Sbjct: 404 MQQRPASSGSQRPASSG---SQRPASSGSQ--RPGSSTNRQAPMRPPGSGSTMNGQSANR 458
Query: 396 N 394
N
Sbjct: 459 N 459
>At2g22720.1 68415.m02693 expressed protein
Length = 340
Score = 28.3 bits (60), Expect = 4.7
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = -1
Query: 576 LRKSPGSRGNNLPISSKRGHSNKACRLGPQ*WRXGAPSERRRNYPSPGSTGSRPGNSSHR 397
+++ P S G+ P SS S + G Q R G+ + R+ PGS + G S++R
Sbjct: 72 MQQRPASSGSQRPASSG---SQRPASSGSQ--RPGSSTNRQAPMRPPGSGSTMNGQSANR 126
Query: 396 N 394
N
Sbjct: 127 N 127
>At2g35510.1 68415.m04349 WWE domain-containing protein contains
Pfam domain, PF02825: WWE domain
Length = 568
Score = 27.5 bits (58), Expect = 8.2
Identities = 21/60 (35%), Positives = 28/60 (46%)
Frame = -1
Query: 564 PGSRGNNLPISSKRGHSNKACRLGPQ*WRXGAPSERRRNYPSPGSTGSRPGNSSHRNSPR 385
P + GN LP + R S+ GP+ G+PS S G +GS +SS R PR
Sbjct: 447 PNAEGNILPTTQSRHESSGLTLEGPK----GSPSNEPGRV-SNGGSGSEKNSSSSRR-PR 500
>At1g18620.1 68414.m02321 expressed protein
Length = 978
Score = 27.5 bits (58), Expect = 8.2
Identities = 21/64 (32%), Positives = 29/64 (45%)
Frame = -1
Query: 582 RSLRKSPGSRGNNLPISSKRGHSNKACRLGPQ*WRXGAPSERRRNYPSPGSTGSRPGNSS 403
R + KS + +PI S G NK CR P R + S + SPG+ + P SS
Sbjct: 476 RLVEKSGIPSSSLIPIHSLSG-LNKTCREEPVNVRRSSTSRKAVKDRSPGNQRAEPCISS 534
Query: 402 HRNS 391
+ S
Sbjct: 535 DKKS 538
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,329,291
Number of Sequences: 28952
Number of extensions: 256409
Number of successful extensions: 663
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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