Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_D19
         (576 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25070.1 68416.m03132 RPM1-interacting protein 4 (RIN4) ident...    29   2.9  
At1g78780.2 68414.m09182 pathogenesis-related family protein con...    29   2.9  
At1g78780.1 68414.m09181 pathogenesis-related family protein con...    29   2.9  
At5g56250.2 68418.m07020 expressed protein                             27   6.8  
At5g56250.1 68418.m07019 expressed protein                             27   6.8  
At5g56240.1 68418.m07018 expressed protein                             27   6.8  
At5g20140.1 68418.m02397 SOUL heme-binding family protein contai...    27   6.8  
At4g01290.1 68417.m00170 expressed protein                             27   6.8  
At1g20610.1 68414.m02575 cyclin, putative similar to G2/mitotic-...    27   9.0  

>At3g25070.1 68416.m03132 RPM1-interacting protein 4 (RIN4)
           identical to SP|Q8GYN5 RPM1-interacting protein 4
           {Arabidopsis thaliana}
          Length = 211

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/57 (24%), Positives = 30/57 (52%)
 Frame = +1

Query: 397 FENTEIEEHVNKCLFLNSCEKSNSKRQGQQLLSPNEKRKKVEKLTALPPNLKSSQSQ 567
           F N E EE+V    + +   K+ +   G ++++PN+     +  +  PP+  SS+++
Sbjct: 9   FGNWEAEENVPYTAYFDKARKTRAP--GSKIMNPNDPEYNSDSQSQAPPHPPSSRTK 63


>At1g78780.2 68414.m09182 pathogenesis-related family protein
           contains similarity to pathogen-related protein
           (GI:499073) (Swiss-Prot:P16273) [Hordeum vulgare]
          Length = 238

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = -2

Query: 440 KRHLFTCSSISVFSKLXLHIGQFTVFVQSXIFLSFQFYEPGEETFKPS 297
           K  LF      + ++  L +G +   +++ +   FQ+Y+P EE+F+ S
Sbjct: 81  KFKLFVNGREGLSAEETLRLGSYNALLKNSLPEEFQYYKPEEESFESS 128


>At1g78780.1 68414.m09181 pathogenesis-related family protein
           contains similarity to pathogen-related protein
           (GI:499073) (Swiss-Prot:P16273) [Hordeum vulgare]
          Length = 176

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = -2

Query: 440 KRHLFTCSSISVFSKLXLHIGQFTVFVQSXIFLSFQFYEPGEETFKPS 297
           K  LF      + ++  L +G +   +++ +   FQ+Y+P EE+F+ S
Sbjct: 19  KFKLFVNGREGLSAEETLRLGSYNALLKNSLPEEFQYYKPEEESFESS 66


>At5g56250.2 68418.m07020 expressed protein
          Length = 811

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +1

Query: 376 CPICNX--SFENTEIEEHVNKCLFLNS 450
           CPIC    S  NT +  H+++CL ++S
Sbjct: 178 CPICKTFSSASNTTLNAHIDQCLSVDS 204


>At5g56250.1 68418.m07019 expressed protein
          Length = 811

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +1

Query: 376 CPICNX--SFENTEIEEHVNKCLFLNS 450
           CPIC    S  NT +  H+++CL ++S
Sbjct: 178 CPICKTFSSASNTTLNAHIDQCLSVDS 204


>At5g56240.1 68418.m07018 expressed protein 
          Length = 986

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +1

Query: 376 CPICNX--SFENTEIEEHVNKCLFLNS 450
           CPIC    S  NT +  H+++CL ++S
Sbjct: 199 CPICKTFSSASNTTLNAHIDQCLSVDS 225


>At5g20140.1 68418.m02397 SOUL heme-binding family protein contains
           PFam profile PF04832: SOUL heme-binding protein
          Length = 378

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 282 FCFHMKIWDDTKKGDGINKEG 220
           FC H+ +WD  K  D  + EG
Sbjct: 169 FCSHLDLWDSIKNNDYFSLEG 189


>At4g01290.1 68417.m00170 expressed protein 
          Length = 991

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +1

Query: 406 TEIEEHVNKCLFLNSCEKSNSKRQGQQLLSPNEKRKKVE--KLTALPPNLKSS 558
           T +++  ++ L       S+ K Q  QLLS  E+R      K T  PP++KS+
Sbjct: 602 TSVDDQASQHLLSLLQRSSDPKSQDTQLLSATERRPPPPSMKTTTPPPSVKST 654


>At1g20610.1 68414.m02575 cyclin, putative similar to
           G2/mitotic-specific cyclins (B-like cyclin) from
           {Medicago varia} SP|P46278, SP|P46277; contains Pfam
           profiles PF00134: Cyclin, N-terminal domain, PF02984:
           Cyclin, C-terminal domain
          Length = 429

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/54 (22%), Positives = 27/54 (50%)
 Frame = +1

Query: 400 ENTEIEEHVNKCLFLNSCEKSNSKRQGQQLLSPNEKRKKVEKLTALPPNLKSSQ 561
           E  + ++     + +++C+K+N     + +   +   K  EKL+ +PPN   +Q
Sbjct: 149 EMEDADKEEEPVIDIDACDKNNPLAAVEYIHDMHTFYKNFEKLSCVPPNYMDNQ 202


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,430,043
Number of Sequences: 28952
Number of extensions: 220840
Number of successful extensions: 598
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)