Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_D13
         (911 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g08980.1 68416.m01049 signal peptidase I family protein simil...    87   1e-17
At1g29960.1 68414.m03663 signal peptidase I family protein / MAD...    63   3e-10
At1g23465.1 68414.m02941 signal peptidase-related                      62   5e-10
At1g53530.1 68414.m06072 signal peptidase I family protein conta...    56   3e-08
At1g06200.1 68414.m00652 expressed protein                             39   0.004
At2g31140.1 68415.m03802 expressed protein                             33   0.26 

>At3g08980.1 68416.m01049 signal peptidase I family protein similar
           to SP|P46972 Mitochondrial inner membrane protease
           subunit 2 (EC 3.4.99.-) {Saccharomyces cerevisiae};
           contains Pfam profile PF00461: Signal peptidase I
          Length = 154

 Score = 87.4 bits (207), Expect = 1e-17
 Identities = 46/122 (37%), Positives = 67/122 (54%), Gaps = 2/122 (1%)
 Frame = +1

Query: 130 LMWLKSVCKSLVFGLPIGVTILDTVGYVARVEGISMQPVLNPE--SMNTDYVFLSRWAVR 303
           ++W   V K    G  IG+TI D    V  V G SM P  NP+  S   DYV + ++ ++
Sbjct: 6   ILW--QVAKKSFTGSIIGLTISDRCCSVVPVRGDSMSPTFNPQRNSYLDDYVLVDKFCLK 63

Query: 304 DYHVKRGDVISLMSPKDPNQKIIKRVVALQGDVVSTLGYKNQYVKIPEGHCWVEGDHTGH 483
           DY   RGDV+   SP     + IKR+V + G+ +S+       +++PEGHCWVEGD+   
Sbjct: 64  DYKFARGDVVVFSSPTHFGDRYIKRIVGMPGEWISS---SRDVIRVPEGHCWVEGDNKTS 120

Query: 484 TL 489
           +L
Sbjct: 121 SL 122



 Score = 35.9 bits (79), Expect = 0.037
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 494 SNTFGPVSLGLVNARAVCIVWPPSR 568
           S +FGP+ LGL+  R   ++WPP R
Sbjct: 124 SRSFGPIPLGLIQGRVTRVMWPPQR 148


>At1g29960.1 68414.m03663 signal peptidase I family protein /
           MADS-box protein-related similar to inner mitochondrial
           membrane peptidase 2 [Homo sapiens] GI:14030456;
           contains Pfam profiles PF00461: Signal peptidase I,
           contains Pfam profile PF00319: SRF-type transcription
           factor (DNA-binding and dimerisation domain); MADS-box
           protein AGL64
          Length = 310

 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 32/97 (32%), Positives = 58/97 (59%), Gaps = 5/97 (5%)
 Frame = +1

Query: 202 VGYVARVEGISMQPVLNPESMNTDYVFLSRWAVRDYHVKRGDVISLMSPKDPNQKIIKRV 381
           +G++A   G SM P L+P     + +   R + R     RGD++ + SP++PN+  IKRV
Sbjct: 37  LGFMAYAYGPSMTPTLHPSG---NVLLAERISKRYQKPSRGDIVVIRSPENPNKTPIKRV 93

Query: 382 VALQGDVVSTL-----GYKNQYVKIPEGHCWVEGDHT 477
           + ++GD +S +       ++Q + +P+GH +V+GD+T
Sbjct: 94  IGIEGDCISFVIDSRKSDESQTIVVPKGHVFVQGDYT 130


>At1g23465.1 68414.m02941 signal peptidase-related
          Length = 155

 Score = 62.1 bits (144), Expect = 5e-10
 Identities = 33/97 (34%), Positives = 58/97 (59%), Gaps = 5/97 (5%)
 Frame = +1

Query: 202 VGYVARVEGISMQPVLNPESMNTDYVFLSRWAVRDYHVKRGDVISLMSPKDPNQKIIKRV 381
           +G++A   G SM P L+P     + +   R + R     RGD++ + SP++PN+  IKRV
Sbjct: 37  LGFMAYAYGPSMIPTLHPSG---NMLLAERISKRYQKPSRGDIVVIRSPENPNKTPIKRV 93

Query: 382 VALQGDVVSTL-----GYKNQYVKIPEGHCWVEGDHT 477
           V ++GD +S +       ++Q + +P+GH +V+GD+T
Sbjct: 94  VGVEGDCISFVIDPVKSDESQTIVVPKGHVFVQGDYT 130


>At1g53530.1 68414.m06072 signal peptidase I family protein contains
           similarity to SP|P28627 Mitochondrial inner membrane
           protease subunit 1 (EC 3.4.99.-) {Saccharomyces
           cerevisiae}; contains Pfam profile PF00461: Signal
           peptidase I
          Length = 168

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
 Frame = +1

Query: 220 VEGISMQPVLNPESMNTDYVFLSRWAVRDYHVKRGDVISLMSPKDPNQKIIKRVVALQGD 399
           V G SM P LN   +  D +     + R   +  GDV+ + SP+DP + + KR++ L+GD
Sbjct: 46  VHGPSMLPTLN---LTGDVILAEHLSHRFGKIGLGDVVLVRSPRDPKRMVTKRILGLEGD 102

Query: 400 VVS-----TLGYKNQYVKIPEGHCWVEGDHTGHTLXQQH 501
            ++      +G  +  V +P+GH W++GD+   +   +H
Sbjct: 103 RLTFSADPLVGDASVSVLVPKGHVWIQGDNLYASTDSRH 141



 Score = 31.5 bits (68), Expect = 0.80
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 494 SNTFGPVSLGLVNARAVCIVWPPSRWQSLQ 583
           S  FGPV   L+  +A+  VWPP  + SL+
Sbjct: 139 SRHFGPVPYSLIEGKALLRVWPPEYFGSLR 168


>At1g06200.1 68414.m00652 expressed protein
          Length = 206

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 23/105 (21%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
 Frame = +1

Query: 163 VFGLPIGVTILDTVGYVARVEGISMQPVLNPESMNTDYVFLSRWAVRDY-HVKRGDVISL 339
           +FG+ +       + Y+   +G  M P +     N   + + +  V D  ++  GD + L
Sbjct: 36  LFGVVMKNLFYGRISYLHSDKGKEMAPTMGT---NESTLLVRKLPVVDTRYIFVGDAVVL 92

Query: 340 MSPKDPNQKIIKRVVALQGDVVSTLGYKNQYVKIPEGHCWVEGDH 474
             P + N+ I++R+ AL+G  + +   K++   + +  CWV  ++
Sbjct: 93  KDPNETNKYIVRRLAALEGSEMVSSDEKDEPFVLEKDQCWVVAEN 137


>At2g31140.1 68415.m03802 expressed protein
          Length = 205

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 22/113 (19%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
 Frame = +1

Query: 139 LKSVCKSLVFGLPIGVTILDTVGYVARVEGISMQPVLNPESMNTDYVFLSRWAVRDYH-V 315
           ++ +CK+L +G          + Y+   +G  M P +   + N + + + +  + +   V
Sbjct: 37  IQIICKNLFYG---------KITYLHSDKGPEMSPTM---TANENTLLIRKIPIANTRFV 84

Query: 316 KRGDVISLMSPKDPNQKIIKRVVALQGDVVSTLGYKNQYVKIPEGHCWVEGDH 474
             GD + L  P D ++ +++R+ A++G  + +   K +   + +  CWV  ++
Sbjct: 85  FIGDAVVLKDPNDSDKYLVRRLAAVEGFEMVSGDEKEEPFVLEKNQCWVTAEN 137


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,553,522
Number of Sequences: 28952
Number of extensions: 373442
Number of successful extensions: 744
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2159049456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)