Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_D16
         (477 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g44716.1 68416.m04812 hypothetical protein                          29   2.2  
At5g39230.1 68418.m04751 transcription initiation factor-related...    27   8.7  
At4g02030.1 68417.m00273 expressed protein                             27   8.7  

>At3g44716.1 68416.m04812 hypothetical protein
          Length = 111

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +3

Query: 84  KILLAIALMLSTVMWVSTQQPQEVHTYCGRHLARTMADL 200
           KI+L + L  S ++  STQ PQE   YCG  L    ++L
Sbjct: 7   KIVLLL-LFFSLILPPSTQNPQEEIYYCGNTLISNPSEL 44


>At5g39230.1 68418.m04751 transcription initiation factor-related
           contains weak similarity to Transcription initiation
           factor IIB (General transcription factor TFIIB)
           (Swiss-Prot:Q8W0W3) [Oryza sativa]
          Length = 119

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 160 VCTSCGCCVDTHITVDNIN 104
           +CT CG  +D+H  VD+ +
Sbjct: 25  ICTECGLILDSHYIVDSFD 43


>At4g02030.1 68417.m00273 expressed protein
          Length = 694

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = +3

Query: 27  FHLWHQRXVLRNTL*SPNMKILLAIALMLSTVMWVSTQQPQEVHTY 164
           FH   ++ +L++ + +   K+ + +     T  WV  ++P+EVH Y
Sbjct: 464 FHAASEK-LLQHYIDTRTQKVSVLLRKRFKTPNWVKHKEPREVHMY 508


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,772,772
Number of Sequences: 28952
Number of extensions: 158977
Number of successful extensions: 401
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)