Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_D11
         (646 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex...    29   3.5  
At4g17570.1 68417.m02627 zinc finger (GATA type) family protein        29   3.5  
At2g35040.1 68415.m04299 AICARFT/IMPCHase bienzyme family protei...    29   3.5  
At5g15890.1 68418.m01859 expressed protein                             28   4.6  
At1g62390.1 68414.m07039 octicosapeptide/Phox/Bem1p (PB1) domain...    28   6.1  
At5g03260.1 68418.m00275 laccase, putative / diphenol oxidase, p...    27   8.1  
At4g27430.1 68417.m03942 COP1-interacting protein 7 (CIP7) ident...    27   8.1  

>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
           extensin family protein similar to extensin-like protein
           [Lycopersicon esculentum] gi|5917664|gb|AAD55979;
           contains leucine-rich repeats, Pfam:PF00560; contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 839

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 461 APPSNDGIPAPPSATPSGHSSST 393
           +PPS   +P+PPS TPS  S  T
Sbjct: 448 SPPSPSIVPSPPSTTPSPGSPPT 470


>At4g17570.1 68417.m02627 zinc finger (GATA type) family protein
          Length = 510

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
 Frame = -2

Query: 537 VEGSESVRQRVGSDAAPSKRHVEDARAAVERR----HPRTAQRHALGTLQLHILSLREVY 370
           V  SES  Q   +D +PS+ +  D     +RR     P+++    L T  L+ + L+E  
Sbjct: 122 VSNSESCAQFSSADGSPSQSNAWDTTVPCKRRTCVGRPKSSSVEKL-TKDLYNI-LQEQQ 179

Query: 369 H*VLTVHSEEELIVE 325
              L+V SEE+L+ E
Sbjct: 180 SSCLSVSSEEDLLFE 194


>At2g35040.1 68415.m04299 AICARFT/IMPCHase bienzyme family protein
           similar to SP|P12048 Bifunctional purine biosynthesis
           protein purH [Includes:
           Phosphoribosylaminoimidazolecarboxamide
           formyltransferase (EC 2.1.2.3) (AICAR transformylase);
           IMP cyclohydrolase (EC 3.5.4.10) (Inosinicase) (IMP
           synthetase) (ATIC)] {Bacillus subtilis}; contains Pfam
           profiles PF01808: AICARFT/IMPCHase bienzyme, PF02142:
           MGS-like domain
          Length = 596

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = -2

Query: 630 KSQEVLEAPQVQRGERAGRRVLEGQALEDGDVEGSESVRQRVGSDAAPSKRHVEDARAA 454
           K+  +LEA +  +G+ + R+V  G   +D D    E +     SD  P++  + DA+ A
Sbjct: 430 KTLRILEAKKNDQGKLSLRQVGGGWLAQDSDDLTPEDISFNSVSDKTPTESELADAKFA 488


>At5g15890.1 68418.m01859 expressed protein
          Length = 526

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 455 PSNDGIPAPPSATPSGHSSSTY 390
           P N  IP PP  TPS H  S++
Sbjct: 68  PVNGSIPTPPYHTPSKHRKSSF 89


>At1g62390.1 68414.m07039 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein / tetratricopeptide repeat
           (TPR)-containing protein contains Pfam profiles PF00564:
           PB1 domain, PF00515: TPR Domain
          Length = 751

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/59 (23%), Positives = 28/59 (47%)
 Frame = -2

Query: 471 EDARAAVERRHPRTAQRHALGTLQLHILSLREVYH*VLTVHSEEELIVEMVSRDAVPGP 295
           E A   +  + P T +  ++G L+LH++ +      +L    EEE+  + V  + +  P
Sbjct: 353 ESAADCILTKEPDTDKSDSVGMLRLHVVDVSPEQEPMLLEEEEEEVEEKPVIEEVISSP 411


>At5g03260.1 68418.m00275 laccase, putative / diphenol oxidase,
           putative similar to laccase [Pinus taeda][GI:13661207]
          Length = 557

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 325 LNDEFFFTVHGQNLVINFSEAQYVELECPEGVALG 429
           LNDE FF + G N+ +   +A Y +    + + LG
Sbjct: 228 LNDELFFGIAGHNMTVVEIDAVYTKPFTTKAILLG 262


>At4g27430.1 68417.m03942 COP1-interacting protein 7 (CIP7)
           identical to COP1-Interacting Protein 7 (CIP7)
           GI:3327868 from [Arabidopsis thaliana]
          Length = 1058

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 534 EGSESVRQRVGSDAAPSKRHVEDARAAVERRHPRTAQR 421
           +  ES  +    D    K+ VE+A  +VERRH  T+ R
Sbjct: 403 DSDESGEEEGFVDGDSIKQQVEEAIGSVERRHKSTSHR 440


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,993,397
Number of Sequences: 28952
Number of extensions: 140497
Number of successful extensions: 610
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)