Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_C15
         (430 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g50890.1 68418.m06308 hypothetical protein                          26   9.4  
At4g10060.1 68417.m01645 expressed protein contains Pfam domain ...    26   9.4  
At1g69360.1 68414.m07960 expressed protein                             26   9.4  
At1g66730.1 68414.m07585 ATP dependent DNA ligase family protein...    26   9.4  
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t...    26   9.4  

>At5g50890.1 68418.m06308 hypothetical protein
          Length = 408

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -3

Query: 260 FLSALKTKPSLQWQV*MRAPTQAVLVRYGSSQVLTQGSSVQWAF 129
           FL+    K S+++ V + A  Q+V  RYGSS V   G S+   F
Sbjct: 176 FLAWESLKGSVRFNVALEA-LQSVATRYGSSNVCVVGHSLGAGF 218


>At4g10060.1 68417.m01645 expressed protein contains Pfam domain
           PF04685: Protein of unknown function, DUF608
          Length = 912

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -3

Query: 146 SVQWAFXRASIFGSAGLESHHGDNQEHDKVLFGGH 42
           ++QWA  R   FG    +   GD +E   +L   H
Sbjct: 842 AIQWALTRTQSFGEEKQKLVAGDEEEESNLLLRQH 876


>At1g69360.1 68414.m07960 expressed protein
          Length = 896

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = -3

Query: 179 YGSSQVLTQGSSVQWAFXRASIFGSAGLESHHGDNQEHDKVLFGGHLRXIFQTTAFQ 9
           YG++    QG   QW     S  G   LE+ +G +   DK+    H   +   +AFQ
Sbjct: 233 YGANISHVQG---QWVEKNTSQNGWMVLEAGNGKSTPRDKLCLPSHSVQVLSNSAFQ 286


>At1g66730.1 68414.m07585 ATP dependent DNA ligase family protein
           contains Pfam profile: PF01068 ATP dependent DNA ligase
           domain
          Length = 1417

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
 Frame = +1

Query: 160 RTCD----DPYLTN-TACVGALIQTCHCNDGLVFNADRKCV 267
           R CD    DP+L     C G  + T +CN   VF +  + V
Sbjct: 175 RFCDEMRFDPFLNGFVGCDGVFLDTTYCNPKFVFPSQEESV 215


>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
           RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
           from [Homo sapiens], RNA-binding protein Y14 [Xenopus
           laevis] GI:11034807; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 202

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -3

Query: 197 QAVLVRYGSSQVLTQGSSVQWAFXRASIFGSAGLESHHGDNQEHDK 60
           Q+ +     +++LTQ  SV WAF      G +G ES+   N  + +
Sbjct: 150 QSAISAMNGAELLTQNVSVDWAFSS----GPSGGESYRRKNSRYGR 191


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,326,218
Number of Sequences: 28952
Number of extensions: 95835
Number of successful extensions: 231
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)