Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_C14
(695 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g27450.2 68418.m03277 mevalonate kinase (MK) identical to mev... 43 2e-04
At5g27450.1 68418.m03276 mevalonate kinase (MK) identical to mev... 43 2e-04
At2g17440.1 68415.m02012 leucine-rich repeat family protein cont... 33 0.14
At4g09450.1 68417.m01555 myb family transcription factor contain... 29 2.9
At3g18850.2 68416.m02394 phospholipid/glycerol acyltransferase f... 28 5.1
At3g18850.1 68416.m02393 phospholipid/glycerol acyltransferase f... 28 5.1
At3g02790.1 68416.m00271 zinc finger (C2H2 type) family protein ... 28 5.1
At1g54780.1 68414.m06246 thylakoid lumen 18.3 kDa protein SP:Q9ZVL6 28 6.8
At1g54230.1 68414.m06183 hypothetical protein 28 6.8
At5g19560.1 68418.m02329 hypothetical protein contains Pfam prof... 27 9.0
At4g05310.1 68417.m00809 ubiquitin family protein contains INTER... 27 9.0
At1g67340.1 68414.m07665 zinc finger (MYND type) family protein ... 27 9.0
At1g31910.1 68414.m03921 GHMP kinase family protein contains TIG... 27 9.0
>At5g27450.2 68418.m03277 mevalonate kinase (MK) identical to
mevalonate kinase [Arabidopsis thaliana]
SWISS-PROT:P46086
Length = 378
Score = 42.7 bits (96), Expect = 2e-04
Identities = 17/37 (45%), Positives = 27/37 (72%)
Frame = +2
Query: 179 VSVSAPGKVILHGEHSVVYGKTAIAVSLGLRSSIVIK 289
V APGK+IL GEH+VV+G TA+A ++ L + + ++
Sbjct: 3 VKARAPGKIILAGEHAVVHGSTAVAAAIDLYTYVTLR 39
Score = 31.1 bits (67), Expect = 0.73
Identities = 18/53 (33%), Positives = 31/53 (58%)
Frame = +3
Query: 534 NSLRSFLYVFSGIFGSTYLPVKSMDISMGSELTIGAGTGSSASFAVCLXGALI 692
+ + +FL++++ I G + P + + SEL G+G GSSA+ V L AL+
Sbjct: 114 SGISTFLWLYTRIIG--FNPAT---VVINSELPYGSGLGSSAALCVALTAALL 161
>At5g27450.1 68418.m03276 mevalonate kinase (MK) identical to
mevalonate kinase [Arabidopsis thaliana]
SWISS-PROT:P46086
Length = 378
Score = 42.7 bits (96), Expect = 2e-04
Identities = 17/37 (45%), Positives = 27/37 (72%)
Frame = +2
Query: 179 VSVSAPGKVILHGEHSVVYGKTAIAVSLGLRSSIVIK 289
V APGK+IL GEH+VV+G TA+A ++ L + + ++
Sbjct: 3 VKARAPGKIILAGEHAVVHGSTAVAAAIDLYTYVTLR 39
Score = 31.1 bits (67), Expect = 0.73
Identities = 18/53 (33%), Positives = 31/53 (58%)
Frame = +3
Query: 534 NSLRSFLYVFSGIFGSTYLPVKSMDISMGSELTIGAGTGSSASFAVCLXGALI 692
+ + +FL++++ I G + P + + SEL G+G GSSA+ V L AL+
Sbjct: 114 SGISTFLWLYTRIIG--FNPAT---VVINSELPYGSGLGSSAALCVALTAALL 161
>At2g17440.1 68415.m02012 leucine-rich repeat family protein
contains Pfam PF00560: Leucine Rich Repeats
Length = 526
Score = 33.5 bits (73), Expect = 0.14
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = -2
Query: 694 CINAPXRQTAKDAELPVPAPMVSSDPI 614
CI +P TA +PVPAP+VSSD I
Sbjct: 109 CIASPNSTTALPRSVPVPAPVVSSDEI 135
>At4g09450.1 68417.m01555 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 200
Score = 29.1 bits (62), Expect = 2.9
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = -2
Query: 595 TGRYVLPKIPENTYRKLRKEFF*LLGNESKLGL 497
+G+YVLPK PE+ Y KL E GN K G+
Sbjct: 60 SGKYVLPKYPEDDYVKL-TEAGESKGNGKKTGI 91
>At3g18850.2 68416.m02394 phospholipid/glycerol acyltransferase
family protein contains Pfam profile: PF01553
Acyltransferase
Length = 375
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +3
Query: 411 ITGKFSWRLPHKIDHDYHLRRVEEYLHLIKPNFDSLPNNQKN 536
+T + R P +D+ Y + E ++H+ + N +PN +K+
Sbjct: 232 VTIGYKTRCPSFLDNVYGIEPSEVHIHIRRINLTQIPNQEKD 273
>At3g18850.1 68416.m02393 phospholipid/glycerol acyltransferase
family protein contains Pfam profile: PF01553
Acyltransferase
Length = 375
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +3
Query: 411 ITGKFSWRLPHKIDHDYHLRRVEEYLHLIKPNFDSLPNNQKN 536
+T + R P +D+ Y + E ++H+ + N +PN +K+
Sbjct: 232 VTIGYKTRCPSFLDNVYGIEPSEVHIHIRRINLTQIPNQEKD 273
>At3g02790.1 68416.m00271 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 105
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 225 ECSPCKMTFPGAETLTVNKLSTAVNIV 145
EC CK+T PG +T+ ++ S NI+
Sbjct: 48 ECPHCKITAPGLKTMQIHHESKHPNII 74
>At1g54780.1 68414.m06246 thylakoid lumen 18.3 kDa protein SP:Q9ZVL6
Length = 285
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 259 PRPKELHSDKGSKHSTRTSSPHTFA 333
P+P LH K + HS S P TF+
Sbjct: 16 PKPLSLHQTKPTSHSLSLSKPTTFS 40
>At1g54230.1 68414.m06183 hypothetical protein
Length = 266
Score = 27.9 bits (59), Expect = 6.8
Identities = 20/48 (41%), Positives = 27/48 (56%)
Frame = -2
Query: 625 SDPIEISIDFTGRYVLPKIPENTYRKLRKEFF*LLGNESKLGLIKCRY 482
S P+ ISI F RYV IP+N+ +LR E L+ E K+ + RY
Sbjct: 51 SFPLPISIRFQDRYV---IPDNSRERLRGEVEKLVA-ERKIEKVGNRY 94
>At5g19560.1 68418.m02329 hypothetical protein contains Pfam profile
PF03759: Domain of unknown function (DUF315)
Length = 493
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 486 LHLIKPNFDSLPNNQKNSLRSFLY 557
+H+ + DSLP N K SL FLY
Sbjct: 238 MHVPENYIDSLPKNGKTSLGDFLY 261
>At4g05310.1 68417.m00809 ubiquitin family protein contains
INTERPRO:IPR000626 ubiquitin domain
Length = 415
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -3
Query: 399 SLGWNRLLTVGSNGMVSCRSTHGKCMWTAGS 307
S WNR+L + MVS R TH +T GS
Sbjct: 374 SFEWNRVLPAETVYMVSGRDTHFASSFTRGS 404
>At1g67340.1 68414.m07665 zinc finger (MYND type) family protein /
F-box family protein
Length = 379
Score = 27.5 bits (58), Expect = 9.0
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +3
Query: 360 HWSRQSKVCSILNWHQGITGKFSWRLPHKID 452
H R+ VC ++N+ W+L HK+D
Sbjct: 315 HEFRRCSVCGVVNYCSRACQALDWKLRHKMD 345
>At1g31910.1 68414.m03921 GHMP kinase family protein contains
TIGRFAM profile TIGR01219: phosphomevalonate kinase;
contains Pfam PF00288: GHMP kinases putative ATP-binding
protein domain; similar to Phosphomevalonate kinase (EC
2.7.4.2) (Swiss-Prot:P24521) [Saccharomyces cerevisiae]
Length = 505
Score = 27.5 bits (58), Expect = 9.0
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 179 VSVSAPGKVILHGEHSVVYGKTA-IAVSLGLRSSIVIKEVNTPHEP 313
V SAPGKV++ G + V+ A + +S R ++K +N +P
Sbjct: 3 VVASAPGKVLMTGGYLVLEKPNAGLVLSTNARFYAIVKPINEEVKP 48
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,959,544
Number of Sequences: 28952
Number of extensions: 356521
Number of successful extensions: 981
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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