Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_C11
         (746 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02150.1 68418.m00136 expressed protein                             66   3e-11
At3g09350.1 68416.m01109 armadillo/beta-catenin repeat family pr...    64   9e-11
At3g53800.1 68416.m05944 armadillo/beta-catenin repeat family pr...    56   2e-08
At3g51980.1 68416.m05702 expressed protein                             48   7e-06
At1g31480.1 68414.m03854 shoot gravitropism 2 (SGR2) Plant Cell ...    29   4.3  
At3g13410.1 68416.m01686 expressed protein                             28   7.6  

>At5g02150.1 68418.m00136 expressed protein
          Length = 324

 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 34/129 (26%), Positives = 68/129 (52%)
 Frame = +1

Query: 259 LQWKPQKLKMHQGNSELGPIDDERRKFLEDALKSLTVNIAEVLLNAIRILTNTERIRSIQ 438
           L+W    L    G      + +E RK+  +A++S TV++ + L    ++L   +++  ++
Sbjct: 12  LKWS---LSHSDGTRPTCQLSEEDRKWFAEAMQSQTVDVVKRLKEITQVLQTPQQV--LE 66

Query: 439 FGEPLPEDVQAAFDNVLEYIDDIDTANDFYKMGGFAMFPICYGSENEKVRALASTVLAEL 618
             E  P+D++   D + E+++ ID AND + +GG         + N  +RA ++ V++ +
Sbjct: 67  AHEVTPQDIEGLLDELQEHVESIDMANDLHSVGGLVPLLGYLKNSNANIRAKSADVVSTI 126

Query: 619 CQNNPFCQE 645
            +NNP  QE
Sbjct: 127 VENNPRSQE 135


>At3g09350.1 68416.m01109 armadillo/beta-catenin repeat family
           protein contains Pfam profile: PF00514
           armadillo/beta-catenin-like repeat
          Length = 363

 Score = 64.1 bits (149), Expect = 9e-11
 Identities = 36/129 (27%), Positives = 67/129 (51%)
 Frame = +1

Query: 259 LQWKPQKLKMHQGNSELGPIDDERRKFLEDALKSLTVNIAEVLLNAIRILTNTERIRSIQ 438
           L+W    L    G      + +E RK+  +A++S TV++ + +     ++   E++  ++
Sbjct: 12  LKWS---LSHADGTRPTRQLSEEDRKWFMEAMQSQTVDVVKRMKEITLVMQTPEQVL-VE 67

Query: 439 FGEPLPEDVQAAFDNVLEYIDDIDTANDFYKMGGFAMFPICYGSENEKVRALASTVLAEL 618
            G   PED+Q   D + E+++ ID AND + +GG         + +  +RA A+ V++ +
Sbjct: 68  HGVT-PEDIQDLLDELQEHVESIDMANDLHSIGGLVPLLSFLKNSHANIRAKAADVVSTI 126

Query: 619 CQNNPFCQE 645
            QNNP  QE
Sbjct: 127 VQNNPRSQE 135


>At3g53800.1 68416.m05944 armadillo/beta-catenin repeat family
           protein contains Pfam profile: PF00514
           armadillo/beta-catenin-like repeat
          Length = 363

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 34/129 (26%), Positives = 64/129 (49%)
 Frame = +1

Query: 259 LQWKPQKLKMHQGNSELGPIDDERRKFLEDALKSLTVNIAEVLLNAIRILTNTERIRSIQ 438
           L+W    L    G S    I +E R++  +A+++ T++    +    +I+   E++   Q
Sbjct: 12  LKWS---LSHSDGASSSSRISEEDRQWFVEAMQAHTIDSISRMKVISQIMKMPEQVLEAQ 68

Query: 439 FGEPLPEDVQAAFDNVLEYIDDIDTANDFYKMGGFAMFPICYGSENEKVRALASTVLAEL 618
                P+D++     + E+++ ID AND + +GG         + N K+RA ++ VL  +
Sbjct: 69  --GVTPDDLEGMLAELQEHVESIDLANDLHSIGGLVPLLSYLKNSNAKIRAKSADVLTTV 126

Query: 619 CQNNPFCQE 645
            QNNP  Q+
Sbjct: 127 VQNNPRSQQ 135


>At3g51980.1 68416.m05702 expressed protein
          Length = 382

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 25/64 (39%), Positives = 35/64 (54%)
 Frame = +1

Query: 457 EDVQAAFDNVLEYIDDIDTANDFYKMGGFAMFPICYGSENEKVRALASTVLAELCQNNPF 636
           ED   A   +L  ++ ID AND  K GG  +       ++ +VR LA+ VL +  QNNPF
Sbjct: 134 EDRHRALQELLILVEPIDNANDLSKSGGLRVVAGELNHDDTEVRKLAAWVLGKASQNNPF 193

Query: 637 CQEK 648
            QE+
Sbjct: 194 VQEQ 197


>At1g31480.1 68414.m03854 shoot gravitropism 2 (SGR2) Plant Cell
           2002 Jan;14:33-46 PMID:11826297; similar to
           phospholipase [Homo sapiens] GI:4760647; identical to
           cDNA PF02862: DDHD domain
          Length = 933

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = +1

Query: 319 DDERRKFLEDALKSLTVNIAEVLLNAIRILTNTERIRSIQFGEPLPEDVQ 468
           ++ER K L+D + SL   +A++L    RIL++ +   S+   E   E VQ
Sbjct: 601 NEERIKLLQDEVNSLRSKVAQLLSENARILSDEKAKTSVAPKELNNEKVQ 650


>At3g13410.1 68416.m01686 expressed protein
          Length = 321

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 505 IDTANDFYKMGGFAM-FPICYGSENEKVRALASTVLAELCQNN 630
           ++T N+ +    F++ FP     E E++  L  + L E C NN
Sbjct: 112 VNTLNNLFTASNFSLAFPYIAAPEEERMENLLLSGLKEACPNN 154


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,792,179
Number of Sequences: 28952
Number of extensions: 260381
Number of successful extensions: 743
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)