Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_C06
         (624 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g21530.1 68417.m03111 transducin family protein / WD-40 repea...    69   3e-12
At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6 ...    28   4.4  
At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6 ...    28   4.4  

>At4g21530.1 68417.m03111 transducin family protein / WD-40 repeat
           family protein contains 1 WD-40 repeat (PF00400);
           similar to anaphase-promoting complex subunit 4
           GI:6180011 [Homo sapiens]; supported by EST GB:AU237382
          Length = 510

 Score = 68.9 bits (161), Expect = 3e-12
 Identities = 28/76 (36%), Positives = 47/76 (61%)
 Frame = +1

Query: 196 VPYQVDLMVWSNRLDLLALSNNKGEVQIHRLHWQKVWSLPPPKENGCVQAMAWRPDGKAL 375
           +P+Q+ +  W+   DLLA+     ++ +HR +WQ++W++ P K    V ++ WRPDGKA+
Sbjct: 23  IPFQIKIAEWNPEKDLLAMVTEDSKILLHRFNWQRLWTISPGKP---VTSLCWRPDGKAI 79

Query: 376 AIGYNLGIIYTVSVED 423
           A+G   G I    VE+
Sbjct: 80  AVGLEDGTISLHDVEN 95


>At4g33270.1 68417.m04734 WD-40 repeat family protein contains 6
           WD-40 repeats (PF00400); WD-repeat protein -Daucus
           carota,PID:g2253631
          Length = 457

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 322 KENGCVQAMAWRPDGKALAIGYN 390
           +E G V ++ W PDG+ +A+G N
Sbjct: 180 EEKGPVTSINWAPDGRHVAVGLN 202


>At4g33260.1 68417.m04733 WD-40 repeat family protein contains 6
           WD-40 repeats (PF00400); WD-repeat protein -Daucus
           carota, PID:g2253631
          Length = 447

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 322 KENGCVQAMAWRPDGKALAIGYN 390
           +E G V ++ W PDG+ +A+G N
Sbjct: 170 EEKGPVTSINWAPDGRHVAVGLN 192


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,347,892
Number of Sequences: 28952
Number of extensions: 238714
Number of successful extensions: 523
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)