Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_C04
         (618 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g18940.1 68415.m02211 pentatricopeptide (PPR) repeat-containi...    30   1.4  
At3g54460.1 68416.m06025 SNF2 domain-containing protein / helica...    29   3.3  
At3g20620.1 68416.m02609 F-box family protein-related contains w...    28   4.3  
At1g05810.1 68414.m00608 Ras-related protein (ARA-1) (ARA) / sma...    28   5.7  
At5g07390.1 68418.m00846 respiratory burst oxidase protein A (Rb...    27   7.5  
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu...    27   10.0 

>At2g18940.1 68415.m02211 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile: PF01535 PPR repeat
          Length = 822

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 24/87 (27%), Positives = 35/87 (40%)
 Frame = +1

Query: 244 LSHCGVGSP*HSNKVTGEFSRHPTLREAWWPRRRSGSQIVNAGKRGSLAVCAKTRVKLAL 423
           L H     P HSN     F       ++   +   G +I N  + GSL +  K  V L  
Sbjct: 55  LVHLSSPPPRHSNSAAARFPSLEVSTDSSSSKPILGIEIENE-RNGSLKLLCKKEVVLVN 113

Query: 424 SSIGSKTCVVSALFDALRSHRRRGDEV 504
           S +      +S  FD+++S   R D V
Sbjct: 114 SIVEQPLTGLSRFFDSVKSELLRTDLV 140


>At3g54460.1 68416.m06025 SNF2 domain-containing protein / helicase
           domain-containing protein / F-box family protein similar
           to SP|P36607 DNA repair protein rad8
           {Schizosaccharomyces pombe}; contains Pfam profiles
           PF00271: Helicase conserved C-terminal domain, PF00176:
           SNF2 family N-terminal domain, PF00646: F-box domain
          Length = 1378

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 153 CLGLVCLIVIIDRGEHGSE 209
           CL ++C +V +D+GE+G E
Sbjct: 146 CLKIICRVVKVDKGENGEE 164


>At3g20620.1 68416.m02609 F-box family protein-related contains weak
           hit to TIGRFAM TIGR01640 : F-box protein interaction
           domain; similar to F-box protein family, AtFBX8
           (GI:20197464) [Arabidopsis thaliana]
          Length = 391

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 355 QIVNAGKRGSLAVCAKTRVKLALSSIGSKTCVVSAL 462
           Q+  +GK  SL VC      + L S+ +K C +S L
Sbjct: 43  QLAESGKNSSLVVCPSMGKTMKLYSMDAKRCKLSLL 78


>At1g05810.1 68414.m00608 Ras-related protein (ARA-1) (ARA) / small
           GTP-binding protein, putative nearly identical to
           SP:P19892 Ras-related protein ARA-1 [Arabidopsis
           thaliana] (Gene 76:313-319(1989))
          Length = 261

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -3

Query: 214 LHSLPCSPLSIITMRQTSPRQLS 146
           LH LP  PLS+    QTSP  LS
Sbjct: 8   LHRLPSPPLSLSLSLQTSPTSLS 30


>At5g07390.1 68418.m00846 respiratory burst oxidase protein A
           (RbohA) / NADPH oxidase identical to respiratory burst
           oxidase protein A from Arabidopsis thaliana [gi:3242781]
          Length = 902

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 184 IITMRQTSPRQLSSIRRGTIRFITVIVNELDKYFY 80
           IIT+   S  +L +IRR    +  +I+ ELD Y Y
Sbjct: 249 IITL-SASANELDNIRRQADEYAALIMEELDPYHY 282


>At4g35785.1 68417.m05082 transformer serine/arginine-rich
           ribonucleoprotein, putative similar to transformer-SR
           ribonucleoprotein [Nicotiana tabacum]
           gi|1781299|emb|CAA70700
          Length = 140

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 30/92 (32%), Positives = 41/92 (44%)
 Frame = -2

Query: 542 ARGPRRPRNFPLYTSSPRRRWERRASKSADTTHVFEPIEDSASLTRVLAQTARLPRFPAL 363
           A  P+R R+    + SP  R ER  S+S   +        S S  R+ +++  LPR P  
Sbjct: 2   ADSPQRRRD----SRSPSPRKERARSRSRSRSR-------SRSRPRLRSRSRSLPR-PVS 49

Query: 362 TI*LPERRRGHHASRSVGWRLNSPVTLLLCYG 267
               P R RG   SRS G  + +P T L   G
Sbjct: 50  ----PSRSRGRSRSRSRGSEVENPGTTLYVTG 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,324,039
Number of Sequences: 28952
Number of extensions: 236943
Number of successful extensions: 593
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)