Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_C03
         (407 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g48050.1 68415.m06014 expressed protein ; expression supporte...    28   2.8  
At3g62700.1 68416.m07043 glutathione-conjugate transporter, puta...    27   4.8  
At5g64230.1 68418.m08068 expressed protein                             27   6.4  
At4g24320.1 68417.m03491 hypothetical protein                          27   6.4  

>At2g48050.1 68415.m06014 expressed protein ; expression supported by
            MPSS
          Length = 1500

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +1

Query: 151  LFMYSLSIINGYSV*CIVYMLTVIIIIYINSCSFVYYLYIFLINHC 288
            LF+Y+L +  G +     ++  VI+++Y      + YLY  +I HC
Sbjct: 1022 LFLYALCVHTGPT-----HIFWVIMLMYTEIYILLQYLYQIIIQHC 1062


>At3g62700.1 68416.m07043 glutathione-conjugate transporter,
           putative similar to glutathione-conjugate transporter
           AtMRP4 GI:2959767 from [Arabidopsis thaliana]
          Length = 1539

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = +1

Query: 202 VYMLTVIIIIYINSCSFVYYLYIFLINHCE*NEVDNVVFLLLSIKNV 342
           ++  TV++ I ++ CS V  +  F     +   VD + +L+ ++ NV
Sbjct: 96  LFKTTVVVTIVLSFCSLVLCVSAFFTTRTKLKLVDTLFWLIHAVTNV 142


>At5g64230.1 68418.m08068 expressed protein
          Length = 379

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 268 IFLINHCE*NEVDNVVFLLLSIKNVYP 348
           I +INHCE + +   ++ LLS  N  P
Sbjct: 87  ILVINHCEESGIGRAIWQLLSAMNEIP 113


>At4g24320.1 68417.m03491 hypothetical protein
          Length = 395

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = +1

Query: 34  LVSHKKTALKSFDRRTKILFAIKKNRQQSLXGTNSRRFLLFMYSLSIINGYSV 192
           L   K  AL    RR  +  +  + R+ ++ G+  ++ L   YS++   GY +
Sbjct: 182 LTGEKTLALTISSRRNNLPVSEMERREATIDGSRVKKGLRIRYSMNFPKGYEL 234


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,397,579
Number of Sequences: 28952
Number of extensions: 104316
Number of successful extensions: 185
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)