Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_B18
(758 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59900.1 68418.m07512 pentatricopeptide (PPR) repeat-containi... 34 0.089
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 32 0.48
At3g48750.1 68416.m05324 cell division control protein 2 homolog... 32 0.48
At5g02860.1 68418.m00229 pentatricopeptide (PPR) repeat-containi... 31 0.63
At1g73710.1 68414.m08535 pentatricopeptide (PPR) repeat-containi... 31 0.83
At1g74580.1 68414.m08639 pentatricopeptide (PPR) repeat-containi... 30 1.5
At1g63960.1 68414.m07244 hypothetical protein 30 1.5
At1g51965.1 68414.m05859 pentatricopeptide (PPR) repeat-containi... 30 1.9
At5g27270.1 68418.m03254 pentatricopeptide (PPR) repeat-containi... 29 2.5
At2g18940.1 68415.m02211 pentatricopeptide (PPR) repeat-containi... 29 3.4
At3g16010.1 68416.m02025 pentatricopeptide (PPR) repeat-containi... 29 4.4
At5g42310.1 68418.m05149 pentatricopeptide (PPR) repeat-containi... 28 5.9
At5g39980.1 68418.m04848 pentatricopeptide (PPR) repeat-containi... 28 7.7
At5g10270.1 68418.m01192 cyclin-dependent kinase, putative / CDK... 28 7.7
>At5g59900.1 68418.m07512 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 907
Score = 34.3 bits (75), Expect = 0.089
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +2
Query: 380 RRRGHVEFIYAALARMKEFGVHKDLQAYKALVDVLPKGK 496
R+RG +E + R+ +FGV +L Y AL+D L KG+
Sbjct: 343 RKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGR 381
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 31.9 bits (69), Expect = 0.48
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 512 IFQAEFMHY-PKQQQCAVDLLEQMEDNKVMPDSELEQMLLNVFGKRGI 652
+F EFMHY ++Q+ AV L+ ++P S+ + +L V GK I
Sbjct: 537 VFYDEFMHYLEEKQRAAVSKLDDTTTLFLVPPSDFSEKVLKVPGKLSI 584
>At3g48750.1 68416.m05324 cell division control protein 2 homolog A
(CDC2A) identical to cell division control protein 2
homolog A [Arabidopsis thaliana] SWISS-PROT:P24100
Length = 294
Score = 31.9 bits (69), Expect = 0.48
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +2
Query: 572 EQMEDNKVMP-DSELEQMLLNVFGKRGIPLRKFWRMLYWMPKFKNLSPWYLPDEL 733
E + + P DSE++Q L +F G P WR + +P +K+ P + P +L
Sbjct: 196 EMISQKPLFPGDSEIDQ-LFKIFRIMGTPYEDTWRGVTSLPDYKSAFPKWKPTDL 249
>At5g02860.1 68418.m00229 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 819
Score = 31.5 bits (68), Expect = 0.63
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +2
Query: 557 AVDLLEQMEDNKVMPDSELEQMLLNVFGKRGIPLRKFWRMLYWMPKFKNLSP 712
AV++ ++ME++ P ++LNVFGK G P K ++ M K ++P
Sbjct: 227 AVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKM-KSDGIAP 277
>At1g73710.1 68414.m08535 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587, post-transcriptional control of
chloroplast gene expression CRP1 [Zea mays] GI:3289002;
contains Pfam profile PF01535: PPR repeat
Length = 991
Score = 31.1 bits (67), Expect = 0.83
Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 2/104 (1%)
Frame = +2
Query: 347 EAIKMFENQDNRRRGHVEFIYAALARMKEFGVHKDLQAYKALVDVLPKGKFIPSNIFQAE 526
+A+ +F+ N+ E Y +L +M GV +A + L ++L G + A
Sbjct: 533 KALSLFKGMKNQGTWPDECTYNSLFQMLA-GVDLVDEAQRILAEMLDSGCKPGCKTYAAM 591
Query: 527 FMHYPKQQQC--AVDLLEQMEDNKVMPDSELEQMLLNVFGKRGI 652
Y + AVDL E ME V P+ + L+N F + G+
Sbjct: 592 IASYVRLGLLSDAVDLYEAMEKTGVKPNEVVYGSLINGFAESGM 635
>At1g74580.1 68414.m08639 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 763
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/66 (28%), Positives = 31/66 (46%)
Frame = +2
Query: 452 LQAYKALVDVLPKGKFIPSNIFQAEFMHYPKQQQCAVDLLEQMEDNKVMPDSELEQMLLN 631
++ YK +V+ NI Y K + A+ LLE+M++ V PD+ L++
Sbjct: 516 METYKTMVEKGCAPNLFTFNILLESLCRYRKLDE-ALGLLEEMKNKSVNPDAVTFGTLID 574
Query: 632 VFGKRG 649
F K G
Sbjct: 575 GFCKNG 580
>At1g63960.1 68414.m07244 hypothetical protein
Length = 101
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +2
Query: 263 RRWESSNTKVAVYDPFANKPKKNKDTYLEAIKMFENQDNRRRGHVEFIY 409
+RWES+ K+A + PF K + E K EN+ R R E +Y
Sbjct: 25 KRWESA--KMATFGPFDPKKEAETAAAAEKKKKEENEREREREREEALY 71
>At1g51965.1 68414.m05859 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 650
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/82 (24%), Positives = 38/82 (46%)
Frame = +2
Query: 404 IYAALARMKEFGVHKDLQAYKALVDVLPKGKFIPSNIFQAEFMHYPKQQQCAVDLLEQME 583
+++AL ++K+ DL ++ + P NI A F + + A+++ E++E
Sbjct: 448 VFSALGKLKQISHIHDL--FEKMKKDGPSPDIFTYNILIASFGRVGEVDE-AINIFEELE 504
Query: 584 DNKVMPDSELEQMLLNVFGKRG 649
+ PD L+N GK G
Sbjct: 505 RSDCKPDIISYNSLINCLGKNG 526
>At5g27270.1 68418.m03254 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1038
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +2
Query: 533 HYPKQQQCAVDLLEQMEDNKVMPDSELEQMLLNVFGKRGI 652
+YPK A+ L ME NK+ D + +++ ++GK G+
Sbjct: 378 NYPK----ALSLFADMERNKIPADEVIRGLIIRIYGKLGL 413
>At2g18940.1 68415.m02211 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 822
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 557 AVDLLEQMEDNKVMPDSELEQMLLNVFGKRGIPLRKFWRML 679
A+DL E+M++ P ++L+VFGK G RK +L
Sbjct: 229 AIDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVL 269
>At3g16010.1 68416.m02025 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 642
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 557 AVDLLEQMEDNKVMPDSELEQMLLNVFGKRGIPLR 661
A LL +ME+N D ++LN F + G+P R
Sbjct: 533 ANSLLRKMEENGCRADINSHNIILNGFARTGVPRR 567
>At5g42310.1 68418.m05149 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 709
Score = 28.3 bits (60), Expect = 5.9
Identities = 23/107 (21%), Positives = 48/107 (44%), Gaps = 3/107 (2%)
Frame = +2
Query: 341 YLEAIKMFENQDNRRRGHVEFIYAALARMKEFGVHKDLQAYKALVDVLPKGKFIPSNIFQ 520
++ A +MFE + RRG + + +G + K L+ + +P+ +
Sbjct: 495 HIVAEEMFEAME--RRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTH 552
Query: 521 AEFMH-YPKQQQC--AVDLLEQMEDNKVMPDSELEQMLLNVFGKRGI 652
+ Y K + A++ LE+M+ + P S + L+N + +RG+
Sbjct: 553 TTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGL 599
>At5g39980.1 68418.m04848 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 678
Score = 27.9 bits (59), Expect = 7.7
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
Frame = +2
Query: 449 DLQAYKALVD-VLPKGKFIPS----NIFQAEFMHYPKQQQCAVDLLEQMEDNKVMPDSEL 613
D Q AL+D V + K+ PS N+ + KQ A L ++M + PD
Sbjct: 134 DWQRSLALLDWVHEEAKYTPSVFAYNVVLRNVLR-AKQFDIAHGLFDEMRQRALAPDRYT 192
Query: 614 EQMLLNVFGKRGIPLRKFWRMLYWMPKFK 700
L+ FGK G+ F L W+ K +
Sbjct: 193 YSTLITSFGKEGM----FDSALSWLQKME 217
>At5g10270.1 68418.m01192 cyclin-dependent kinase, putative / CDK,
putative similar to cyclin dependent kinase C
[Lycopersicon esculentum] gi|15215944|emb|CAC51391
Length = 505
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/47 (27%), Positives = 20/47 (42%)
Frame = +2
Query: 572 EQMEDNKVMPDSELEQMLLNVFGKRGIPLRKFWRMLYWMPKFKNLSP 712
E + ++P ++ L +F G P K W + MP F N P
Sbjct: 233 ELLHAKPILPGKNEQEQLNKIFELCGSPDEKLWPGVSKMPWFNNFKP 279
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,548,151
Number of Sequences: 28952
Number of extensions: 307576
Number of successful extensions: 839
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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