Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P01_F_B14
         (396 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19630.1 68415.m02293 F-box family protein contains F-box dom...    32   0.16 
At2g32800.1 68415.m04015 protein kinase family protein contains ...    29   1.5  
At5g48100.1 68418.m05942 laccase family protein / diphenol oxida...    28   2.6  
At5g13500.3 68418.m01559 expressed protein predicted protein At2...    27   4.5  
At5g13500.2 68418.m01558 expressed protein predicted protein At2...    27   4.5  
At5g13500.1 68418.m01557 expressed protein predicted protein At2...    27   4.5  
At5g62470.1 68418.m07839 myb family transcription factor (MYB96)...    27   6.0  
At4g31250.1 68417.m04436 leucine-rich repeat transmembrane prote...    27   6.0  
At3g45130.1 68416.m04871 cycloartenol synthase, putative / 2,3-e...    27   6.0  
At2g07050.1 68415.m00806 cycloartenol synthase (CAS1) / 2,3-epox...    27   6.0  
At5g46330.1 68418.m05703 leucine-rich repeat transmembrane prote...    26   7.9  
At1g78955.1 68414.m09205 beta-amyrin synthase, putative similar ...    26   7.9  

>At2g19630.1 68415.m02293 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 297

 Score = 31.9 bits (69), Expect = 0.16
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
 Frame = +3

Query: 27  LASDKLSKCLRRF*SQCWLSSPARRPTRMWCLCRTLQLPATPFP--TCHPYLYLPSTALH 200
           L+ + +++C  R  S+ W S+ +R       L R+L  P   F       YL+L S  L 
Sbjct: 29  LSVNSIARC--RCVSKQWASTLSRPYFTELFLTRSLARPKLLFAYRKGSDYLFLSSPQLQ 86

Query: 201 SPASTHKSHMQMIISFVNKMLK*IHTSGTSSVTINKIYCC 320
           +P   HK    ++   VN  +  I T G+ +++   I CC
Sbjct: 87  NPDDDHKKSSPVV---VNYHMHHILTLGSGNMSWRTIQCC 123


>At2g32800.1 68415.m04015 protein kinase family protein contains
           dual protein kinase domains, Pfam:PF00069
          Length = 851

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
 Frame = +3

Query: 75  CWLSSPARRPTRMWCLCR-----TLQLPATPFPTCHPYLYLPSTALHSPAST 215
           C L++P  RP   W +       +  LPA P    HP LY+P ++L S +++
Sbjct: 398 CSLNNPTHRPNMKWVIGALSGEFSGNLPALPSFKSHP-LYIPLSSLKSTSTS 448


>At5g48100.1 68418.m05942 laccase family protein / diphenol oxidase
           family protein similar to  laccase [Pinus
           taeda][GI:13661197]
          Length = 565

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 152 LSYVSSLSVPTVYSSAFTGFYPQIAYAND 238
           LSY SS    T   S+F+G+YP + + ND
Sbjct: 300 LSYTSSCKAKT---SSFSGYYPTLPFYND 325


>At5g13500.3 68418.m01559 expressed protein predicted protein
           At2g25260 - Arabidopsis thaliana, EMBL:AC007070
          Length = 358

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +2

Query: 110 YVVPLPYAATAGYPLSYVSSLSVPTVYSSAFTGFYP 217
           +V PLP  A  G+P ++      P  Y +    +YP
Sbjct: 164 FVNPLPNLAVGGFPAAFPFFYITPEKYENIVRKYYP 199


>At5g13500.2 68418.m01558 expressed protein predicted protein
           At2g25260 - Arabidopsis thaliana, EMBL:AC007070
          Length = 358

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +2

Query: 110 YVVPLPYAATAGYPLSYVSSLSVPTVYSSAFTGFYP 217
           +V PLP  A  G+P ++      P  Y +    +YP
Sbjct: 164 FVNPLPNLAVGGFPAAFPFFYITPEKYENIVRKYYP 199


>At5g13500.1 68418.m01557 expressed protein predicted protein
           At2g25260 - Arabidopsis thaliana, EMBL:AC007070
          Length = 358

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +2

Query: 110 YVVPLPYAATAGYPLSYVSSLSVPTVYSSAFTGFYP 217
           +V PLP  A  G+P ++      P  Y +    +YP
Sbjct: 164 FVNPLPNLAVGGFPAAFPFFYITPEKYENIVRKYYP 199


>At5g62470.1 68418.m07839 myb family transcription factor (MYB96)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 351

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -3

Query: 163 HVGKGVAGSCSVRQRHHIRVGRRAGEESQHCDQKRLKHFDNL 38
           H G   + SC +R  +++R G + G  ++H ++K + H   L
Sbjct: 43  HTGLRCSKSCRLRWTNYLRPGIKRGNFTEH-EEKTIVHLQAL 83


>At4g31250.1 68417.m04436 leucine-rich repeat transmembrane protein
           kinase, putative receptor kinase, Petunia inflata,
           Patchx:G498278
          Length = 676

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 97  GGRPVCGASAVRCNCRLPPFLRVILI 174
           G + +CGA  + C    PPF  V L+
Sbjct: 224 GNKGLCGAPLLPCRYTRPPFFTVFLL 249


>At3g45130.1 68416.m04871 cycloartenol synthase, putative /
           2,3-epoxysqualene--cycloartenol cyclase, putative /
           (S)-2,3-epoxysqualene mutase, putative 77% similar to
           cycloartenol synthase [SP|P38605|gi:452446] [PMID:
           7505443]; oxidosqualene cyclase  LcOSC2 - Luffa
           cylindrica, EMBL:AB033335
          Length = 748

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 102 PTRMWCLCRTLQLP 143
           P RMWC CR + LP
Sbjct: 251 PGRMWCHCRMVYLP 264


>At2g07050.1 68415.m00806 cycloartenol synthase (CAS1) /
           2,3-epoxysqualene--cycloartenol cyclase /
           (S)-2,3-epoxysqualene mutase identical to cycloartenol
           synthase [SP:P38605 | GI:452446] [PMID:7505443]
          Length = 759

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 102 PTRMWCLCRTLQLP 143
           P RMWC CR + LP
Sbjct: 251 PGRMWCHCRMVYLP 264


>At5g46330.1 68418.m05703 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 1173

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 152 LSYVSSLSVPTVYSSAFTGFYPQ 220
           + ++ SL V T++S+ FTG +PQ
Sbjct: 332 IGFLESLEVLTLHSNNFTGEFPQ 354


>At1g78955.1 68414.m09205 beta-amyrin synthase, putative similar to
           beta-Amyrin Synthase GI:3688600 from [Panax ginseng] and
           GI:8918271 from [Pisum sativum]
          Length = 769

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 102 PTRMWCLCRTLQLP 143
           P +MWC CR + +P
Sbjct: 254 PAKMWCYCRLVYMP 267


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,765,340
Number of Sequences: 28952
Number of extensions: 132681
Number of successful extensions: 470
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 565902384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)