Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P01_F_B01
(717 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g24450.1 68414.m03080 ribonuclease III family protein contain... 33 0.19
At1g19030.1 68414.m02369 hypothetical protein 29 2.3
At3g15050.1 68416.m01904 calmodulin-binding family protein simil... 29 3.1
At3g57340.2 68416.m06383 DNAJ heat shock N-terminal domain-conta... 29 4.1
At3g57340.1 68416.m06382 DNAJ heat shock N-terminal domain-conta... 29 4.1
At4g24160.2 68417.m03466 hydrolase, alpha/beta fold family prote... 28 5.4
At4g24160.1 68417.m03467 hydrolase, alpha/beta fold family prote... 28 5.4
At1g14200.1 68414.m01680 zinc finger (C3HC4-type RING finger) fa... 28 5.4
At3g14870.1 68416.m01880 expressed protein contains Pfam profile... 28 7.1
At1g06150.1 68414.m00646 pentatricopeptide (PPR) repeat-containi... 28 7.1
>At1g24450.1 68414.m03080 ribonuclease III family protein contains
similarity to Swiss-Prot:P51837 ribonuclease III (EC
3.1.26.3) (RNase III) [Coxiella burnetii]
Length = 191
Score = 33.1 bits (72), Expect = 0.19
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Frame = +3
Query: 315 ITNTAMHLEITMGDIGLTTKVLDRLIIHQDPLRTSC-LDQDQDQCLGLYP-IKTHSEEDL 488
I TA+ L+ DI +++K L RLI + +SC LD D+ LGL I+ ++ D
Sbjct: 89 IIETAVSLQFLAKDIDISSKALGRLISEVSNVESSCALDGDR---LGLGKIIRVSTKTDA 145
Query: 489 VRMALLC 509
A+LC
Sbjct: 146 SNSAILC 152
>At1g19030.1 68414.m02369 hypothetical protein
Length = 398
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -3
Query: 472 WVLIG*RPKHWSWSWSKHEVRRGSWWMIKRSRT 374
W ++ R W K+ +RRGS+W++K + T
Sbjct: 121 WRILSARRSLWVELVKKYLIRRGSFWLVKENTT 153
>At3g15050.1 68416.m01904 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 259
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 442 WSWSWSKHEVRRGSWWMIKRSRTLVVRPISP 350
W WSW + + W + R++ VV+PI P
Sbjct: 199 WGWSWKERWIAARPWEI--RAQCYVVKPIKP 227
>At3g57340.2 68416.m06383 DNAJ heat shock N-terminal
domain-containing protein similar to SP|Q9QYI4 DnaJ
homolog subfamily B member 12 Mus musculus; contains
Pfam profile PF00226 DnaJ domain
Length = 367
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +2
Query: 188 SNTGFSIMSIPFYKMNSREEYEMNEDCGWTEEPPRLPRRKIRNNEYSNAFGNYNGGYWSD 367
S F +S F + S +E D ++EP PRR R+N +NGGY+ +
Sbjct: 150 SEEAFKSVSKAFQCL-SNDEARKKYDVSGSDEPIYQPRRSARSN-------GFNGGYYYE 201
Query: 368 DQ 373
D+
Sbjct: 202 DE 203
>At3g57340.1 68416.m06382 DNAJ heat shock N-terminal
domain-containing protein similar to SP|Q9QYI4 DnaJ
homolog subfamily B member 12 Mus musculus; contains
Pfam profile PF00226 DnaJ domain
Length = 367
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +2
Query: 188 SNTGFSIMSIPFYKMNSREEYEMNEDCGWTEEPPRLPRRKIRNNEYSNAFGNYNGGYWSD 367
S F +S F + S +E D ++EP PRR R+N +NGGY+ +
Sbjct: 150 SEEAFKSVSKAFQCL-SNDEARKKYDVSGSDEPIYQPRRSARSN-------GFNGGYYYE 201
Query: 368 DQ 373
D+
Sbjct: 202 DE 203
>At4g24160.2 68417.m03466 hydrolase, alpha/beta fold family protein
contains Pfam profile PF00561: hydrolase, alpha/beta
fold family
Length = 342
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +2
Query: 479 RGFGPDGPAMRRPNRVERVKRYLMRCGLTKDSLKNIPREILHKIEPEYCG-VCALELDSF 655
RG GP GP + R + GLT++ K + + H + + G +C + SF
Sbjct: 265 RGLGPWGPGLVNRYTTARFGAHSEGTGLTEEEAKLLTDYVYHTLAAKASGELCLKYIFSF 324
Query: 656 G 658
G
Sbjct: 325 G 325
>At4g24160.1 68417.m03467 hydrolase, alpha/beta fold family protein
contains Pfam profile PF00561: hydrolase, alpha/beta
fold family
Length = 418
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +2
Query: 479 RGFGPDGPAMRRPNRVERVKRYLMRCGLTKDSLKNIPREILHKIEPEYCG-VCALELDSF 655
RG GP GP + R + GLT++ K + + H + + G +C + SF
Sbjct: 265 RGLGPWGPGLVNRYTTARFGAHSEGTGLTEEEAKLLTDYVYHTLAAKASGELCLKYIFSF 324
Query: 656 G 658
G
Sbjct: 325 G 325
>At1g14200.1 68414.m01680 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 179
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Frame = +2
Query: 566 KDSLKNIPREILHKIEPEYCGVCALELDSFG----MSRLHYLSKNHAKNLXKWV 715
K ++N+PR ++ + + +Y G CA+ LD + + + K H+K + +W+
Sbjct: 87 KSEVENMPRVVIGEDKEKYGGSCAICLDEWSKGDVAAEMPCKHKFHSKCVEEWL 140
>At3g14870.1 68416.m01880 expressed protein contains Pfam profile
PF04859: Plant protein of unknown function (DUF641
Length = 445
Score = 27.9 bits (59), Expect = 7.1
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +2
Query: 518 NRVERVKRYLMRCGLTKDSLKNIPR--EILHKIEPEYCGVCALE 643
N+VERVK+ + L KD KN E K+E EY A+E
Sbjct: 13 NKVERVKKSQEKVKLDKDLAKNAANLSESFDKLEEEYEKRLAME 56
>At1g06150.1 68414.m00646 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1322
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +2
Query: 545 LMRCGLTKDSLK-NIPREILHKIEPEYCGVCALELDSFGMSRLHYLSKNHAKNL 703
LM+C + S + IP + LH+ P++ G +D G++ + + N + +L
Sbjct: 170 LMQCDINSPSDRPKIPSKCLHEASPDFSGEFDKAMDMEGLNIVSQNTSNRSNDL 223
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,294,991
Number of Sequences: 28952
Number of extensions: 316164
Number of successful extensions: 881
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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