Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0137
(508 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g56000.1 68416.m06222 glycosyl transferase family 2 protein s... 29 1.4
At5g18410.2 68418.m02167 expressed protein similar to p53 induci... 27 5.5
At5g18410.1 68418.m02166 expressed protein similar to p53 induci... 27 5.5
At5g15920.1 68418.m01862 structural maintenance of chromosomes (... 27 5.5
At4g16590.1 68417.m02510 glucosyltransferase-related low similar... 27 5.5
At2g33380.1 68415.m04091 calcium-binding RD20 protein (RD20) ind... 27 5.5
At5g62090.2 68418.m07793 expressed protein 27 7.3
At5g62090.1 68418.m07792 expressed protein 27 7.3
At1g24070.1 68414.m03038 glycosyl transferase family 2 protein s... 27 7.3
At1g23480.2 68414.m02946 glycosyl transferase family 2 protein s... 27 7.3
At1g23480.1 68414.m02945 glycosyl transferase family 2 protein s... 27 7.3
At1g01580.1 68414.m00075 ferric-chelate reductase, putative simi... 27 7.3
At3g60970.1 68416.m06823 ABC transporter family protein ABC tran... 27 9.6
>At3g56000.1 68416.m06222 glycosyl transferase family 2 protein
similar to beta-(1-3)-glucosyl transferase GB:AAC62210
GI:3687658 from [Bradyrhizobium japonicum], cellulose
synthase from Agrobacterium tumeficiens [gi:710492] and
Agrobacterium radiobacter [gi:710493]; contains Pfam
glycosyl transferase, group 2 family protein domain
PF00535
Length = 535
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 271 FHNTFLKTIIRLSRSMYTVFYFEYNFFSKYDALVWLVHFVLYCSIVFPYVVF 426
F ++ I + S++ Y YNFF +V + FV YC I+ V+F
Sbjct: 335 FKKIAMEIIKNQNVSLWKKVYLIYNFFFLRKIVVHIFTFVFYCVILPATVIF 386
>At5g18410.2 68418.m02167 expressed protein similar to p53 inducible
protein [Homo sapiens] GI:5616320
Length = 1017
Score = 27.5 bits (58), Expect = 5.5
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +1
Query: 253 INETFFFHNTFLKTIIRLSRSMYTVFYFEYNFFSKYDALVWLVHFVLYCSIVF 411
+++ F +T ++ L M+ V +Y FF + +VWLV +L IVF
Sbjct: 204 LDDLQIFLSTRWAILLNLHVEMFRVN--KYPFFQTFITIVWLVEDILQVLIVF 254
>At5g18410.1 68418.m02166 expressed protein similar to p53 inducible
protein [Homo sapiens] GI:5616320
Length = 1234
Score = 27.5 bits (58), Expect = 5.5
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +1
Query: 253 INETFFFHNTFLKTIIRLSRSMYTVFYFEYNFFSKYDALVWLVHFVLYCSIVF 411
+++ F +T ++ L M+ V +Y FF + +VWLV +L IVF
Sbjct: 204 LDDLQIFLSTRWAILLNLHVEMFRVN--KYPFFQTFITIVWLVEDILQVLIVF 254
>At5g15920.1 68418.m01862 structural maintenance of chromosomes
(SMC) family protein (MSS2) similar to SMC-related
protein MSS2 [Arabidopsis thaliana] GI:9965743; contains
Pfam profiles PF02483: SMC family C-terminal domain,
PF02463: RecF/RecN/SMC N terminal domain
Length = 1053
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 80 QISRLLNEDELTDSNIRLYLKTKQKKSFLIQFCK 181
++ R + E E+ NI+ Y KT Q+ S +++CK
Sbjct: 747 ELERKIRESEI---NIKQYEKTAQQLSLAVEYCK 777
>At4g16590.1 68417.m02510 glucosyltransferase-related low similarity
to beta-(1-3)-glucosyl transferase [Bradyrhizobium
japonicum] GI:3687658
Length = 401
Score = 27.5 bits (58), Expect = 5.5
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +1
Query: 271 FHNTFLKTIIRLSRSMYTVFYFEYNFFSKYDALVWLVHFVLYCSIVFPYVVF 426
F ++ I S++ FY Y+FF V + F YC I+ P VF
Sbjct: 212 FRKMTMEIIFNKRVSIWKKFYVIYSFFFVRKVAVHFLTFFFYC-IIVPTSVF 262
>At2g33380.1 68415.m04091 calcium-binding RD20 protein (RD20)
induced by abscisic acid during dehydration
PMID:10965948; putative transmembrane channel protein
PMID:10965948; identical to GI:10862968 [Arabidopsis
thaliana]; contains EF-hand domain
Length = 236
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -2
Query: 456 TQVRYVILRAENYIRKYYATVQDKM 382
T+ RYV + EN KY TV+DK+
Sbjct: 142 TEGRYVPVNLENIFSKYALTVKDKL 166
>At5g62090.2 68418.m07793 expressed protein
Length = 816
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = -1
Query: 334 NKIQYTSNDLDELLFLGMYYEKK 266
N+I++ S LDELL+LG+ E++
Sbjct: 379 NEIKFASGVLDELLYLGVPSERR 401
>At5g62090.1 68418.m07792 expressed protein
Length = 816
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = -1
Query: 334 NKIQYTSNDLDELLFLGMYYEKK 266
N+I++ S LDELL+LG+ E++
Sbjct: 379 NEIKFASGVLDELLYLGVPSERR 401
>At1g24070.1 68414.m03038 glycosyl transferase family 2 protein
similar to beta-(1-3)-glucosyl transferase GB:AAC62210
GI:3687658 from [Bradyrhizobium japonicum], cellulose
synthase from Agrobacterium tumeficiens [gi:710492] and
Agrobacterium radiobacter [gi:710493]; contains Pfam
glycosyl transferase, group 2 family protein domain
PF00535
Length = 552
Score = 27.1 bits (57), Expect = 7.3
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = +1
Query: 277 NTFLKTIIRLSRS----MYTVFYFEYNFFSKYDALVWLVHFVLYCSIVFPYVVF 426
N F K I+ + R+ ++ Y Y+FF +V F+ YC ++ P VF
Sbjct: 360 NLFRKMIMEIIRNKRVTIWKKLYLVYSFFFLRKIIVHCFTFIFYC-VILPTSVF 412
>At1g23480.2 68414.m02946 glycosyl transferase family 2 protein
similar to cellulose synthase from Agrobacterium
tumeficiens [gi:710492] and Agrobacterium radiobacter
[gi:710493]; contains Pfam glycosyl transferase, group 2
family protein domain PF00535 isoform contains GG
acceptor splice site at intron 1
Length = 484
Score = 27.1 bits (57), Expect = 7.3
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 313 SMYTVFYFEYNFFSKYDALVWLVHFVLYCSIVFPYVVF 426
S + Y YNFF +V + FV YC I+ V+F
Sbjct: 302 SAWKKLYLIYNFFFIRKIVVHIFTFVFYCLILPTTVLF 339
>At1g23480.1 68414.m02945 glycosyl transferase family 2 protein
similar to cellulose synthase from Agrobacterium
tumeficiens [gi:710492] and Agrobacterium radiobacter
[gi:710493]; contains Pfam glycosyl transferase, group 2
family protein domain PF00535 isoform contains GG
acceptor splice site at intron 1
Length = 556
Score = 27.1 bits (57), Expect = 7.3
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 313 SMYTVFYFEYNFFSKYDALVWLVHFVLYCSIVFPYVVF 426
S + Y YNFF +V + FV YC I+ V+F
Sbjct: 374 SAWKKLYLIYNFFFIRKIVVHIFTFVFYCLILPTTVLF 411
>At1g01580.1 68414.m00075 ferric-chelate reductase, putative similar
to ferric-chelate reductase (FRO1) [Pisum sativum]
GI:15341529; contains Pfam profile: PF01794 ferric
reductase like transmembrane component
Length = 725
Score = 27.1 bits (57), Expect = 7.3
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +1
Query: 331 YFEYNFFSKYDALVWLVHFVLYCSIVFPYV 420
+FE F++ Y +V+++ FVL+ I F ++
Sbjct: 285 FFEVFFYTHYLYIVFMLFFVLHVGISFSFI 314
>At3g60970.1 68416.m06823 ABC transporter family protein ABC
transporter-like proteins
Length = 1037
Score = 26.6 bits (56), Expect = 9.6
Identities = 12/36 (33%), Positives = 24/36 (66%)
Frame = +2
Query: 116 DSNIRLYLKTKQKKSFLIQFCKTVK**VGKDIFLTH 223
DS + + K+K++ L+Q +T K +GK+++LT+
Sbjct: 438 DSEHNISTENKKKEAKLVQDEETEKGVIGKEVYLTY 473
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,499,031
Number of Sequences: 28952
Number of extensions: 172421
Number of successful extensions: 353
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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