Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0132
         (682 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59570.1 68416.m06647 RabGAP/TBC domain-containing protein si...    31   0.93 
At1g30170.1 68414.m03688 hypothetical protein contains Pfam prof...    29   2.2  
At1g69420.2 68414.m07975 zinc finger (DHHC type) family protein ...    27   8.7  
At1g69420.1 68414.m07974 zinc finger (DHHC type) family protein ...    27   8.7  

>At3g59570.1 68416.m06647 RabGAP/TBC domain-containing protein
           similar to GTPase activating protein [Yarrowia
           lipolytica] GI:2370595; contains Pfam profile PF00566:
           TBC domain
          Length = 720

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 392 SFVLDNKPLGFPLDRPVVDALFKVPNMYFKDIF 490
           SFV  + P GFP   P  D +F  P++   D+F
Sbjct: 213 SFVPPSSPYGFPSPGPFADDIFDFPSLPVTDLF 245


>At1g30170.1 68414.m03688 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 366

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = +3

Query: 114 FELDWFTTKLTAGQNKIIRNSNEFVIFKEDSVPMTEIMKMLDE-GKVPLICRKSSVTCLK 290
           F + W+     A  +KI   +  F++F+E+       M   D+ G + +   KS   C+ 
Sbjct: 254 FLVKWYAKGCLASSSKITYETQRFMVFREEETTEERFMCYTDDIGDLCIFVSKSEAFCVP 313

Query: 291 DS 296
            S
Sbjct: 314 AS 315


>At1g69420.2 68414.m07975 zinc finger (DHHC type) family protein
           contains Pfam profile: PF01529: DHHC zinc finger domain
          Length = 596

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 629 SFYIFFG-YYGCKIHQFI*I*FFGTTLDCV 543
           +FY+FF  + G KIHQ+I +  +   + CV
Sbjct: 27  AFYVFFAPFVGKKIHQYIAMGIYTPLITCV 56


>At1g69420.1 68414.m07974 zinc finger (DHHC type) family protein
           contains Pfam profile: PF01529: DHHC zinc finger domain
          Length = 596

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 629 SFYIFFG-YYGCKIHQFI*I*FFGTTLDCV 543
           +FY+FF  + G KIHQ+I +  +   + CV
Sbjct: 27  AFYVFFAPFVGKKIHQYIAMGIYTPLITCV 56


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,295,845
Number of Sequences: 28952
Number of extensions: 308389
Number of successful extensions: 754
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)