Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0122
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g28990.1 68415.m03526 leucine-rich repeat protein kinase, put...    31   0.73 
At2g43400.1 68415.m05394 electron transfer flavoprotein-ubiquino...    30   1.3  
At1g50260.1 68414.m05635 C2 domain-containing protein low simila...    30   1.3  
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...    29   3.9  
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...    29   3.9  
At2g19150.1 68415.m02235 pectinesterase family protein contains ...    29   3.9  
At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative...    28   5.2  
At5g22740.1 68418.m02656 glycosyl transferase family 2 protein s...    28   6.8  
At1g21020.1 68414.m02630 hypothetical protein similar to At3g265...    28   6.8  

>At2g28990.1 68415.m03526 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 884

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 20/67 (29%), Positives = 29/67 (43%)
 Frame = +3

Query: 354 TFRTGSGPAFSGLPRIFLAVRSCRFRFVRDRHDSVRPPFNGQLRTGTDKGNPLSN*NKAL 533
           T+ T SG       R++L+      R+  D HD +  PFNG   T       ++N N A 
Sbjct: 179 TYVTQSGSLMMSF-RVYLSNSDASIRYADDVHDRIWSPFNGSSHTHITTDLNINNSN-AY 236

Query: 534 RWPSRVL 554
             P  +L
Sbjct: 237 EIPKNIL 243


>At2g43400.1 68415.m05394 electron transfer flavoprotein-ubiquinone
           oxidoreductase family protein contains Pfam profile:
           PF05187 Electron transfer flavoprotein-ubiquinone 
           oxidoreductase
          Length = 633

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 284 LAKTNITHEHDQTRHRRIRFPSKPD 210
           L ++N  H+HDQ  H R+R P  P+
Sbjct: 539 LYRSNTNHDHDQPSHLRLRDPKIPE 563


>At1g50260.1 68414.m05635 C2 domain-containing protein low
           similarity to CLB1 [Lycopersicon esculentum] GI:2789434;
           contains Pfam profile PF00168: C2 domain
          Length = 675

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 371 RTRVLRPSADLPSRKVVSVSFRARSARFCTTAVQRSAQN 487
           R+RVLRPS  + + + +S  FR  S     T   R A N
Sbjct: 37  RSRVLRPSVKISNFRFISCGFRGNSKNLRLTDSSRKAAN 75


>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 9/37 (24%), Positives = 22/37 (59%)
 Frame = -1

Query: 637 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 527
           ++T  V P ++ F+H  I +  ++ + V+ + GH+ +
Sbjct: 33  VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 69


>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 9/37 (24%), Positives = 22/37 (59%)
 Frame = -1

Query: 637 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 527
           ++T  V P ++ F+H  I +  ++ + V+ + GH+ +
Sbjct: 32  VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 68


>At2g19150.1 68415.m02235 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 339

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 4   ICGGVRILSADLENSGEGCTWRCRAGSYPYPQQV 105
           I GG+  +    ++  EGCT + R G YP P +V
Sbjct: 185 ISGGIDFIFGGAQSIFEGCTLKLRVGIYP-PNEV 217


>At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative
           strong similarity to probable NADP-dependent
           oxidoreductase (zeta-crystallin homolog) P1
           [SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
           Arabidopsis thaliana
          Length = 239

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 378 RVRIQSET*DDFRECHIKYIQFLRPH 301
           R+RIQ     DF + + K+++FL PH
Sbjct: 172 RIRIQGFVVSDFYDEYSKFLEFLHPH 197


>At5g22740.1 68418.m02656 glycosyl transferase family 2 protein
           similar to beta-(1-3)-glucosyl transferase GB:AAC62210
           GI:3687658 from [Bradyrhizobium japonicum], cellulose
           synthase from Agrobacterium tumeficiens [gi:710492] and
           Agrobacterium radiobacter [gi:710493]; contains Pfam
           glycosyl transferase, group 2 family protein domain
           PF00535
          Length = 534

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +3

Query: 306 ASKTVYI*YDTRENRLTFRTGSGPAFSGLPRIFLAVRSCRFRFVRDRHDSVRPPF 470
           ASK + I Y  RENR+ ++ G+     GL R +  V+ C +  + D      P F
Sbjct: 154 ASKGINIRYQIRENRVGYKAGA--LKEGLKRSY--VKHCEYVVIFDADFQPEPDF 204


>At1g21020.1 68414.m02630 hypothetical protein similar to At3g26530,
           At1g08760, At1g08740, At2g29240, At1g35650
          Length = 751

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = -1

Query: 214 PTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSS 113
           PTRPG +S SL R  G+N PT+ T +  +   SS
Sbjct: 499 PTRPGLRS-SLKRKRGNNGPTAATILTPAVDNSS 531


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,251,147
Number of Sequences: 28952
Number of extensions: 362481
Number of successful extensions: 1081
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)