Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0114
         (666 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g02800.2 68415.m00225 protein kinase (APK2b) identical to pro...    32   0.39 
At2g02800.1 68415.m00224 protein kinase (APK2b) identical to pro...    32   0.39 
At1g18700.1 68414.m02333 DNAJ heat shock N-terminal domain-conta...    31   0.52 
At1g76965.1 68414.m08961 glycine-rich protein                          29   2.1  
At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ...    29   3.7  
At2g45560.1 68415.m05665 cytochrome P450 family protein                29   3.7  
At2g19150.1 68415.m02235 pectinesterase family protein contains ...    29   3.7  
At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative...    28   4.9  
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox...    28   4.9  
At5g22390.1 68418.m02612 expressed protein                             27   8.5  
At3g25250.1 68416.m03154 protein kinase family protein contains ...    27   8.5  
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical...    27   8.5  

>At2g02800.2 68415.m00225 protein kinase (APK2b) identical to
           protein kinase APK2b [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695
          Length = 426

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
 Frame = -3

Query: 436 LRPHYIKILTR*NEHNARTSTRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 260
           LRP   ++L + ++     ST+PGTG     ++ D+PR S   ++ K   +++ D P LH
Sbjct: 352 LRPKMSEVLAKLDQLE---STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408

Query: 259 YSSTRGSSP 233
              T G+SP
Sbjct: 409 I--TPGASP 415


>At2g02800.1 68415.m00224 protein kinase (APK2b) identical to
           protein kinase APK2b [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695
          Length = 426

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
 Frame = -3

Query: 436 LRPHYIKILTR*NEHNARTSTRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 260
           LRP   ++L + ++     ST+PGTG     ++ D+PR S   ++ K   +++ D P LH
Sbjct: 352 LRPKMSEVLAKLDQLE---STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408

Query: 259 YSSTRGSSP 233
              T G+SP
Sbjct: 409 I--TPGASP 415


>At1g18700.1 68414.m02333 DNAJ heat shock N-terminal
           domain-containing protein low similarity to SP|Q9QYI8
           DnaJ homolog subfamily B member 7 Mus musculus; contains
           Pfam profile PF00226 DnaJ domain
          Length = 700

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 426 CGLKNCIYLI*HSRKSSYVSDWIRTRVLGLPRIF 527
           C   +C+        +  ++DW  T VLGLPR+F
Sbjct: 234 CKTADCLIRFEGELSADAITDWFATTVLGLPRVF 267


>At1g76965.1 68414.m08961 glycine-rich protein 
          Length = 158

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 370 PGTGRIRFPSKPDTPRSSEPILIPKLRIQFAD 275
           PG   + FP KP+ P    P  +P+L + F D
Sbjct: 93  PGAAIVVFPKKPEEPVKVVPTPMPQLNLFFGD 124


>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
           autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
           Pfam profile PF00899: ThiF family
          Length = 697

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -3

Query: 157 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRR 23
           P  ++G    CG  +V NH++LL +S+ L+      ++S  +R +
Sbjct: 42  PISITGFYGPCGHPQVSNHLTLLSESLPLDEQSLIASTSHGNRNK 86


>At2g45560.1 68415.m05665 cytochrome P450 family protein
          Length = 512

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = +2

Query: 341 GREADAAGAGSGRCSCVMFVLAS*YFNIMRPQKLYIFNMTLAKIVLRFGLDPD 499
           GR+ +    G+GR  C    LA    ++M    LY F+  L K VL   LD D
Sbjct: 435 GRDYELTPFGAGRRICPGMPLAMKTVSLMLASLLYSFDWKLPKGVLSEDLDMD 487


>At2g19150.1 68415.m02235 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 339

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 127 ICGGVRILSADLENSGEGCTWRCRAGSYPYPQQV 228
           I GG+  +    ++  EGCT + R G YP P +V
Sbjct: 185 ISGGIDFIFGGAQSIFEGCTLKLRVGIYP-PNEV 217


>At5g16980.1 68418.m01989 NADP-dependent oxidoreductase, putative
           strong similarity to probable NADP-dependent
           oxidoreductase (zeta-crystallin homolog) P1
           [SP|Q39172][gi:886428] and P2 [SP|Q39173][gi:886430],
           Arabidopsis thaliana
          Length = 239

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 502 RVRIQSET*DDFRECHIKYIQFLRPH 425
           R+RIQ     DF + + K+++FL PH
Sbjct: 172 RIRIQGFVVSDFYDEYSKFLEFLHPH 197


>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
           lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
           [Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
           thaliana]
          Length = 926

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 152 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 54
           +S +  P  R    ++PYLPS    G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247


>At5g22390.1 68418.m02612 expressed protein
          Length = 202

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 31 ERSGKSFLFCLSVRVPWNPIEG 96
          + S KSFL  LS   PWNP +G
Sbjct: 17 DNSPKSFLDTLSSSSPWNPSKG 38


>At3g25250.1 68416.m03154 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 421

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/54 (29%), Positives = 21/54 (38%)
 Frame = -2

Query: 308 PYSEVTDPICRLPLPTLFID*RLFTLETCCGYGYEPARHLHVHPSPEFSRSAES 147
           P +    P    P PT+    RLF   + C  G  P   + VH S   + S  S
Sbjct: 176 PRTPQPSPSLSKPSPTMKRKKRLFRFTSFCNSGISPQESISVHSSSTLAVSDSS 229


>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
           DNA Helicase [Arabidopsis thaliana] GI:11121449
          Length = 1188

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -2

Query: 194 HLHVHPSPEFSRSAESIRTPPQMRCSSRSE 105
           H H   +P+ S S  S+RTPP  R +SR E
Sbjct: 229 HYHSTSTPQPSVSNFSLRTPPVDRSASRLE 258


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,022,364
Number of Sequences: 28952
Number of extensions: 324660
Number of successful extensions: 962
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)