Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0107
         (661 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51800.1 68418.m06423 expressed protein                             31   0.90 
At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family prot...    29   2.7  
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...    29   3.6  
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...    29   3.6  
At1g77240.1 68414.m08996 AMP-binding protein, putative strong si...    29   3.6  
At5g02040.2 68418.m00125 prenylated rab acceptor (PRA1) family p...    28   4.8  
At5g02040.1 68418.m00124 prenylated rab acceptor (PRA1) family p...    28   4.8  
At3g62370.1 68416.m07006 expressed protein                             28   6.3  
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic...    27   8.4  

>At5g51800.1 68418.m06423 expressed protein
          Length = 972

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +3

Query: 222 MTLLR*PNASSLISDA-HEWINEIPTVPIYYLAKPQPRERAWENQRGKKTLLSLTLVW 392
           M +LR P++SS I +  H+W N I  V  + L + +  ++  E      +LL+  ++W
Sbjct: 613 MAILRKPDSSSCIENVQHQWPNVIGYVKGFGLWRGEEADKVREGAADPSSLLAEKILW 670


>At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family protein
           similar to SP|P22418 Fructose-1,6-bisphosphatase,
           chloroplast precursor (EC 3.1.3.11)
           (D-fructose-1,6-bisphosphate 1-phosphohydrolase)
           (FBPase) {Spinacia oleracea}; contains Pfam profile
           PF00316: fructose-1,6-bisphosphatase
          Length = 404

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -2

Query: 420 ATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLD 310
           A+ + SP+N+ L   S  SS  +D   P PL +VS D
Sbjct: 105 ASLVASPFNSSLGKLSVNSSSGSDRDAPKPLDIVSND 141


>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 9/37 (24%), Positives = 22/37 (59%)
 Frame = -1

Query: 223 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 113
           ++T  V P ++ F+H  I +  ++ + V+ + GH+ +
Sbjct: 33  VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 69


>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 9/37 (24%), Positives = 22/37 (59%)
 Frame = -1

Query: 223 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 113
           ++T  V P ++ F+H  I +  ++ + V+ + GH+ +
Sbjct: 32  VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 68


>At1g77240.1 68414.m08996 AMP-binding protein, putative strong
           similarity to AMP-binding protein GI:1903034 from
           [Brassica napus]; contains Pfam AMP-binding domain
           PF00501
          Length = 545

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -1

Query: 652 VPPQSNSPPGSVLE-PDHAGVLNGDE-RFRHVTTLHAWNET 536
           +P  SNS P +VL   + A  + GD     H TT+H W+ET
Sbjct: 5   LPHASNSCPLTVLGFLERAASVFGDSPSLLHTTTVHTWSET 45


>At5g02040.2 68418.m00125 prenylated rab acceptor (PRA1) family
           protein contains Pfam PF03208: PRA1 family protein
          Length = 209

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -2

Query: 258 LVTRHLATLRES*LLPPFTRACLNFFTLTFRALGRNH 148
           L+  HLAT+  + L  P  +A  N F   FRA+ RN+
Sbjct: 170 LLIAHLATILHASLRTPNLKARFNTFREEFRAVWRNY 206


>At5g02040.1 68418.m00124 prenylated rab acceptor (PRA1) family
           protein contains Pfam PF03208: PRA1 family protein
          Length = 209

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -2

Query: 258 LVTRHLATLRES*LLPPFTRACLNFFTLTFRALGRNH 148
           L+  HLAT+  + L  P  +A  N F   FRA+ RN+
Sbjct: 170 LLIAHLATILHASLRTPNLKARFNTFREEFRAVWRNY 206


>At3g62370.1 68416.m07006 expressed protein
          Length = 361

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -1

Query: 637 NSPPGSVL--EPDHAGVLNGDERFRHVTTLHAWN 542
           N+ PG +    P   G  NG +RF H+  ++AWN
Sbjct: 160 NAIPGRLYGGNPIDNGEGNGGDRFGHLVDIYAWN 193


>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
           to gi_11935088_gb_AAG41964
          Length = 209

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -2

Query: 432 SPTYATPLMSPYNARLESSSTGSSFPADSPK-PVPLA 325
           SPT +  + SP  A  ++ +  +S P +SPK P P++
Sbjct: 41  SPTKSPAVTSPTTAPAKTPTASASSPVESPKSPAPVS 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,744,377
Number of Sequences: 28952
Number of extensions: 303344
Number of successful extensions: 848
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)