Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0082
         (397 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67970.1 68414.m07764 heat shock factor protein, putative (HS...    30   0.64 
At2g18250.1 68415.m02128 cytidylyltransferase domain-containing ...    28   2.6  
At1g06460.1 68414.m00684 31.2 kDa small heat shock family protei...    27   3.4  
At5g18390.1 68418.m02163 pentatricopeptide (PPR) repeat-containi...    26   7.9  
At5g14390.1 68418.m01681 expressed protein                             26   7.9  
At3g60750.1 68416.m06796 transketolase, putative strong similari...    26   7.9  
At3g57980.1 68416.m06462 DNA-binding bromodomain-containing prot...    26   7.9  

>At1g67970.1 68414.m07764 heat shock factor protein, putative (HSF5)
           / heat shock transcription factor, putative (HSTF5)
           identical to heat shock transcription factor 5 (HSF5)
           SP:Q9S7U5 from [Arabidopsis thaliana]; contains Pfam
           profile: PF00447 HSF-type DNA-binding domain
          Length = 374

 Score = 29.9 bits (64), Expect = 0.64
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -2

Query: 288 GRWCEATIRGISLNASKAEASLAESGKDMLTVEPRESGGSKQCD 157
           G W +  +   S   +K + ++ + GKD LT+E  E  G+ + D
Sbjct: 286 GAWEKLLLLSPSRKKTKKQENIVKKGKDDLTLEEEEEDGTMELD 329


>At2g18250.1 68415.m02128 cytidylyltransferase domain-containing
           protein similar to CoA synthase [Mus musculus]
           GI:21780289, bifunctional phosphopantetheine adenylyl
           transferase / dephospho CoA kinase [Sus scrofa]
           GI:20465246; contains Pfam profile PF01467:
           Cytidylyltransferase
          Length = 176

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 13/58 (22%), Positives = 31/58 (53%)
 Frame = -2

Query: 261 GISLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGSRRS 88
           G+S+N  +AE  L++   +++ +    S G+K    T R   +++ ++++ P   + S
Sbjct: 119 GLSVNRKRAERGLSQLKIEVVEIVSDGSSGNKISSSTLRKMEAEKASKQKQPAEEKAS 176


>At1g06460.1 68414.m00684 31.2 kDa small heat shock family protein /
           hsp20 family protein contains Pfam profile: PF00011
           Hsp20/alpha crystallin family
          Length = 285

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -3

Query: 239 RPKPA*PNPARICSLWSPESREALNNVTLLVAFRIQNAR-RDVEAHLD 99
           RPK   P  A + ++WSP S  A +  + +VA  +  A   D+   +D
Sbjct: 169 RPKLDLPKLANLGTVWSPRSNVAESTHSYVVAIELPGASINDIRVEVD 216


>At5g18390.1 68418.m02163 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 459

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +2

Query: 194 TVSISLPDSARLASALEAFRLIPRMVASHHRPLGRVHEPNVR 319
           T    +P  +++    EAFRL+   V   H+P   ++ P ++
Sbjct: 324 TYKTLIPAVSKIGKIDEAFRLLNNCVEDGHKPFPSLYAPIIK 365


>At5g14390.1 68418.m01681 expressed protein
          Length = 369

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 26/85 (30%), Positives = 36/85 (42%)
 Frame = -2

Query: 264 RGISLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGSRRSM 85
           R +S  AS A+     S  +M    PR+S   ++     R S  KRE  +     S++S 
Sbjct: 263 RDLSSRASTAQLEKQSSDLEM----PRQSVDRRE---KPRQSVDKREKEKPPKGPSKKSK 315

Query: 84  LSXFFLTRAGRLRRSGDNSXRCRGS 10
           L   F     R RRS D   + R S
Sbjct: 316 LRITFEQHLDRTRRSVDFHEKARKS 340


>At3g60750.1 68416.m06796 transketolase, putative strong similarity
           to transketolase 1 [Capsicum annuum] GI:3559814;
           contains Pfam profiles PF02779: Transketolase, pyridine
           binding domain, PF02780: Transketolase, C-terminal
           domain, PF00456: Transketolase, thiamine diphosphate
           binding domain
          Length = 741

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 16/44 (36%), Positives = 18/44 (40%)
 Frame = -3

Query: 386 SFTLLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGL 255
           + TLL A          ERN  FG   H +G    G  L S GL
Sbjct: 462 NMTLLKAFGDFQKATPEERNLRFGVREHGMGAICNGIALHSPGL 505


>At3g57980.1 68416.m06462 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 632

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
 Frame = -2

Query: 342 SVREEPQFRTFGSCTRPSGRWCEATIRGISLNASKAEASLAESGKDMLTVEPRESGG-SK 166
           SV+++    T G   + S       ++G+S + +  E   AES       E R+S   S+
Sbjct: 506 SVQQKKGINTSGGSKKQSAASFLKRMKGVSSSETVVETVKAESSNGKRGAEQRKSNSKSE 565

Query: 165 QCDFTSRVSHSKRETRRR 112
           + D     +  KR T +R
Sbjct: 566 KVDAVKLPAGQKRLTGKR 583


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,353,743
Number of Sequences: 28952
Number of extensions: 158901
Number of successful extensions: 430
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 565902384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)