Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0080
(573 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g76965.1 68414.m08961 glycine-rich protein 29 1.7
At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ... 29 2.9
At5g42370.1 68418.m05159 expressed protein 29 2.9
At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identic... 29 2.9
At4g33560.1 68417.m04769 expressed protein 28 3.8
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox... 28 3.8
At2g02800.2 68415.m00225 protein kinase (APK2b) identical to pro... 28 5.1
At2g02800.1 68415.m00224 protein kinase (APK2b) identical to pro... 28 5.1
At5g22390.1 68418.m02612 expressed protein 27 6.7
At4g21520.1 68417.m03110 transducin family protein / WD-40 repea... 27 6.7
At2g13550.1 68415.m01494 expressed protein 27 6.7
At2g05210.1 68415.m00549 expressed protein 27 8.9
At2g03890.2 68415.m00352 phosphatidylinositol 3- and 4-kinase fa... 27 8.9
At2g03890.1 68415.m00351 phosphatidylinositol 3- and 4-kinase fa... 27 8.9
>At1g76965.1 68414.m08961 glycine-rich protein
Length = 158
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 449 PGTGRIRFPSKPDTPRSSEPILIPKLRIQFAD 354
PG + FP KP+ P P +P+L + F D
Sbjct: 93 PGAAIVVFPKKPEEPVKVVPTPMPQLNLFFGD 124
>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
Pfam profile PF00899: ThiF family
Length = 697
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -2
Query: 236 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRR 102
P ++G CG +V NH++LL +S+ L+ ++S +R +
Sbjct: 42 PISITGFYGPCGHPQVSNHLTLLSESLPLDEQSLIASTSHGNRNK 86
>At5g42370.1 68418.m05159 expressed protein
Length = 447
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 175 PFYRIPWNSNAQAEKKTLPGPLGGVFRPL-WVTPSNTR 65
P Y + + Q+ +K +P PL + R L W TPS R
Sbjct: 285 PLYDVTSSGLVQSVEKVVPRPLRSIVRLLFWYTPSTMR 322
>At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identical
to low affinity calcium antiporter CAX2 (GI:1488267)
[Arabidopsis thaliana]; Ca2+:Cation Antiporter (CaCA)
Family member PMID:11500563
Length = 441
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +2
Query: 38 SIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFC--LSVRVPWNPI 169
S++ SL TS + PK P+++ S K +FC L++ +P+ P+
Sbjct: 41 SLMEQGSLSTSFPQHTPKAPKNSVLNSIKIVIFCNKLNLLLPFGPL 86
>At4g33560.1 68417.m04769 expressed protein
Length = 95
Score = 28.3 bits (60), Expect = 3.8
Identities = 18/41 (43%), Positives = 20/41 (48%)
Frame = -1
Query: 333 YRLEALHLGDLLRIWVRTGATSPRTSPPEFSRSAESIRTPP 211
Y LH + R VRT R SPP S SA SIR+ P
Sbjct: 31 YLFRLLHKEAMAR--VRTITVPSRPSPPTSSSSATSIRSKP 69
>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
[Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
thaliana]
Length = 926
Score = 28.3 bits (60), Expect = 3.8
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 231 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 133
+S + P R ++PYLPS G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247
>At2g02800.2 68415.m00225 protein kinase (APK2b) identical to
protein kinase APK2b [Arabidopsis thaliana]
gi|2852449|dbj|BAA24695
Length = 426
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -2
Query: 458 STRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 339
ST+PGTG ++ D+PR S ++ K +++ D P LH
Sbjct: 368 STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408
>At2g02800.1 68415.m00224 protein kinase (APK2b) identical to
protein kinase APK2b [Arabidopsis thaliana]
gi|2852449|dbj|BAA24695
Length = 426
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -2
Query: 458 STRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 339
ST+PGTG ++ D+PR S ++ K +++ D P LH
Sbjct: 368 STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408
>At5g22390.1 68418.m02612 expressed protein
Length = 202
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 110 ERSGKSFLFCLSVRVPWNPIEG 175
+ S KSFL LS PWNP +G
Sbjct: 17 DNSPKSFLDTLSSSSPWNPSKG 38
>At4g21520.1 68417.m03110 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to guanine nucleotide-binding protein beta 5
(GI:1001939) [Mesocricetus auratus]
Length = 425
Score = 27.5 bits (58), Expect = 6.7
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +2
Query: 212 GGVRILSADLENSGGDVRGDVAPVRTH 292
GG+++ S + ++S +R DV+P RTH
Sbjct: 12 GGLKVESGEQKSSWPTMRFDVSPYRTH 38
>At2g13550.1 68415.m01494 expressed protein
Length = 181
Score = 27.5 bits (58), Expect = 6.7
Identities = 22/61 (36%), Positives = 29/61 (47%)
Frame = -1
Query: 327 LEALHLGDLLRIWVRTGATSPRTSPPEFSRSAESIRTPPQMRCSSRSEPYLPSIGFHGTR 148
L +HL + RTG P+ SPP ES +P Q R +RSEP + G H +
Sbjct: 10 LARMHLPTQFQPNTRTGR-QPK-SPPNSHHPDESSPSPQQERHITRSEPI--TRGIHQLK 65
Query: 147 T 145
T
Sbjct: 66 T 66
>At2g05210.1 68415.m00549 expressed protein
Length = 364
Score = 27.1 bits (57), Expect = 8.9
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = -1
Query: 231 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPR 76
+S T C+ +E Y +GF T TLR+KR L S +F PR
Sbjct: 282 DSTATLEAFLCNKDAE-YFWGLGFQDTETLRKKRNWL--LGIRESSNFVAPR 330
>At2g03890.2 68415.m00352 phosphatidylinositol 3- and 4-kinase
family protein low similarity to phosphatidylinositol
4-kinase type-II beta [Homo sapiens] GI:20159767;
contains Pfam profile PF00454: Phosphatidylinositol 3-
and 4-kinase
Length = 530
Score = 27.1 bits (57), Expect = 8.9
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -2
Query: 158 MELERSGRKENSSRTSRRRLQATLGYPVEHSFLKTRERLL 39
MEL+RS ++ T +RRLQ L +P E S L + +L
Sbjct: 60 MELDRS----DNVHTVKRRLQIALNFPTEESSLTYGDMVL 95
>At2g03890.1 68415.m00351 phosphatidylinositol 3- and 4-kinase
family protein low similarity to phosphatidylinositol
4-kinase type-II beta [Homo sapiens] GI:20159767;
contains Pfam profile PF00454: Phosphatidylinositol 3-
and 4-kinase
Length = 650
Score = 27.1 bits (57), Expect = 8.9
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -2
Query: 158 MELERSGRKENSSRTSRRRLQATLGYPVEHSFLKTRERLL 39
MEL+RS ++ T +RRLQ L +P E S L + +L
Sbjct: 60 MELDRS----DNVHTVKRRLQIALNFPTEESSLTYGDMVL 95
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,529,048
Number of Sequences: 28952
Number of extensions: 302720
Number of successful extensions: 884
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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