Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0075
         (414 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g44800.1 68416.m04826 meprin and TRAF homology domain-contain...    27   3.8  
At1g67970.1 68414.m07764 heat shock factor protein, putative (HS...    27   3.8  
At1g06460.1 68414.m00684 31.2 kDa small heat shock family protei...    27   3.8  
At3g53440.2 68416.m05898 expressed protein                             27   6.6  
At3g53440.1 68416.m05897 expressed protein                             27   6.6  
At4g33830.1 68417.m04801 glycosyl hydrolase family 10 protein xy...    26   8.7  
At4g26190.1 68417.m03770 expressed protein                             26   8.7  
At3g60750.1 68416.m06796 transketolase, putative strong similari...    26   8.7  
At3g15710.1 68416.m01991 signal peptidase, putative similar to S...    26   8.7  

>At3g44800.1 68416.m04826 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein
          Length = 564

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +3

Query: 12  EPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSH 164
           +PR R  LY D  +  + + K+T S+D+   NG +   S+ E   R+ + H
Sbjct: 149 KPRKRMRLYGDGGAVSSHLHKETSSVDV---NGFQVLPSQAESVKRIFERH 196


>At1g67970.1 68414.m07764 heat shock factor protein, putative (HSF5)
           / heat shock transcription factor, putative (HSTF5)
           identical to heat shock transcription factor 5 (HSF5)
           SP:Q9S7U5 from [Arabidopsis thaliana]; contains Pfam
           profile: PF00447 HSF-type DNA-binding domain
          Length = 374

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -3

Query: 289 GRWCEATIRGIILNASKAEASLAESGKDMLTVEPRESGGSKQCD 158
           G W +  +       +K + ++ + GKD LT+E  E  G+ + D
Sbjct: 286 GAWEKLLLLSPSRKKTKKQENIVKKGKDDLTLEEEEEDGTMELD 329


>At1g06460.1 68414.m00684 31.2 kDa small heat shock family protein /
           hsp20 family protein contains Pfam profile: PF00011
           Hsp20/alpha crystallin family
          Length = 285

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -1

Query: 240 RPKPA*PNPARICSLWSPESREALNNVTLLVAFRIQNAR-RDVEAHLD 100
           RPK   P  A + ++WSP S  A +  + +VA  +  A   D+   +D
Sbjct: 169 RPKLDLPKLANLGTVWSPRSNVAESTHSYVVAIELPGASINDIRVEVD 216


>At3g53440.2 68416.m05898 expressed protein
          Length = 512

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 29/111 (26%), Positives = 45/111 (40%)
 Frame = +3

Query: 12  EPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRG 191
           +P  R+     L++RD++VK + D     +P    RR        RLV S      DSR 
Sbjct: 12  QPIRRSARLISLQNRDSQVKPRKDLGFGSEPTKKTRREVLRGLSKRLVYSSDSPIEDSRS 71

Query: 192 STVSISLPDSARLASALEAFRIIPRMVASHHRPLGRVHEPNVRNCGSSRTE 344
             ++IS      L  +L         ++S   P     +P   +  SSRT+
Sbjct: 72  KKLNISKDGFPSLRRSLR--------LSSRECPEVNKEKPKTASTSSSRTK 114


>At3g53440.1 68416.m05897 expressed protein
          Length = 512

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 29/111 (26%), Positives = 45/111 (40%)
 Frame = +3

Query: 12  EPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRG 191
           +P  R+     L++RD++VK + D     +P    RR        RLV S      DSR 
Sbjct: 12  QPIRRSARLISLQNRDSQVKPRKDLGFGSEPTKKTRREVLRGLSKRLVYSSDSPIEDSRS 71

Query: 192 STVSISLPDSARLASALEAFRIIPRMVASHHRPLGRVHEPNVRNCGSSRTE 344
             ++IS      L  +L         ++S   P     +P   +  SSRT+
Sbjct: 72  KKLNISKDGFPSLRRSLR--------LSSRECPEVNKEKPKTASTSSSRTK 114


>At4g33830.1 68417.m04801 glycosyl hydrolase family 10 protein xylan
           endohydrolase isoenzyme X-I, Hordeum
           vulgare,PID:g1813595
          Length = 544

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = -2

Query: 302 HSAERPVVRSYHPRDYPERL*GRSQPSRIRQGYAHCGAPRVGRL*TM*LY*SRFAFKTRD 123
           ++ E P      P  Y E+L    Q  R+R G    G        T  +   R A  T  
Sbjct: 348 YTLEDPTDLKASPAKYLEKL-RELQSIRVR-GNIPLGIGLESHFSTPNIPYMRSALDTLG 405

Query: 122 ATSKPIWIAEID 87
           AT  PIW+ EID
Sbjct: 406 ATGLPIWLTEID 417


>At4g26190.1 68417.m03770 expressed protein
          Length = 1067

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = -2

Query: 137  FKTRDATSKPIWIAEIDAIGFFLNTCITAPK 45
            FKT++   KP+++ ++  +   + TCI+  K
Sbjct: 944  FKTQEKKDKPLFLKDLRRVWDHIGTCISCGK 974


>At3g60750.1 68416.m06796 transketolase, putative strong similarity
           to transketolase 1 [Capsicum annuum] GI:3559814;
           contains Pfam profiles PF02779: Transketolase, pyridine
           binding domain, PF02780: Transketolase, C-terminal
           domain, PF00456: Transketolase, thiamine diphosphate
           binding domain
          Length = 741

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 16/44 (36%), Positives = 18/44 (40%)
 Frame = -1

Query: 387 SFTLLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGL 256
           + TLL A          ERN  FG   H +G    G  L S GL
Sbjct: 462 NMTLLKAFGDFQKATPEERNLRFGVREHGMGAICNGIALHSPGL 505


>At3g15710.1 68416.m01991 signal peptidase, putative similar to
           SP|P13679 Microsomal signal peptidase 21 kDa subunit (EC
           3.4.-.-) {Canis familiaris}; contains Pfam profile:
           PF00461 signal peptidase I
          Length = 180

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = +3

Query: 123 VSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRIIPRMVASHHRPLGRV 302
           V+  E    +V S  +EP   RG  + + + D    A  +  F +  R +   HR + +V
Sbjct: 43  VTGSESPVVVVLSESMEPGFQRGDILFLRMTDEPIRAGEIVVFSVDGREIPIVHRAI-KV 101

Query: 303 HE 308
           HE
Sbjct: 102 HE 103


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,890,297
Number of Sequences: 28952
Number of extensions: 174849
Number of successful extensions: 494
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 625471056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)