Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0073
         (715 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family prot...    29   3.1  
At3g62300.1 68416.m06999 agenet domain-containing protein contai...    29   3.1  
At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote...    29   4.0  
At1g23780.1 68414.m03000 F-box family protein contains Pfam PF00...    28   5.3  
At4g39790.1 68417.m05634 expressed protein  ; expression support...    27   9.3  
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic...    27   9.3  
At3g47910.1 68416.m05224 expressed protein low similarity to non...    27   9.3  
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ...    27   9.3  
At1g67340.1 68414.m07665 zinc finger (MYND type) family protein ...    27   9.3  

>At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family protein
           similar to SP|P22418 Fructose-1,6-bisphosphatase,
           chloroplast precursor (EC 3.1.3.11)
           (D-fructose-1,6-bisphosphate 1-phosphohydrolase)
           (FBPase) {Spinacia oleracea}; contains Pfam profile
           PF00316: fructose-1,6-bisphosphatase
          Length = 404

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 531 ATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLD 641
           A+ + SP+N+ L   S  SS  +D   P PL +VS D
Sbjct: 105 ASLVASPFNSSLGKLSVNSSSGSDRDAPKPLDIVSND 141


>At3g62300.1 68416.m06999 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 722

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +1

Query: 325 WQCPLSESRGXLTRRRAIPTRHHSARLERNTVRPPILSTAHRF-RP 459
           W C + E     ++R+ +  RH    L+ +   P I +T HRF RP
Sbjct: 34  WYCVILEENLAKSKRKKLSVRHLDPLLKYDYSPPLIKTTVHRFMRP 79


>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
           beta-ketoacyl-CoA synthase - Simmondsia
           chinensis,PID:g1045614
          Length = 451

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 230 RAKAGLIQMFSTHRDCESTAYRSFSIK 150
           RAK  L+Q+  TH+  E T+Y+S  ++
Sbjct: 291 RAKYQLMQLVRTHKGMEDTSYKSIELR 317


>At1g23780.1 68414.m03000 F-box family protein contains Pfam
           PF00646: F-box domain; similar to SP:Q9Y3I1 F-box only
           protein 7 {Homo sapiens}; similar to SKP1 interacting
           partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 475

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 135 GARKVTTGITGLWQPSVHSDVPF*WVN 55
           G R ++TG +G+  P +  D PF W N
Sbjct: 411 GRRNISTGRSGIRFPRIIGDPPFTWFN 437


>At4g39790.1 68417.m05634 expressed protein  ; expression supported
           by MPSS
          Length = 631

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 465 VSNETMKVVVFQRRSAKRSPTYATPLMSPYNARLESSSTGSSF 593
           +S++  KV+V++R S+ RS T   PL+       +  S GS F
Sbjct: 295 LSHQVTKVIVWKRTSSSRSSTSRNPLIQTSKEDHDDES-GSDF 336


>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
           to gi_11935088_gb_AAG41964
          Length = 209

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 519 SPTYATPLMSPYNARLESSSTGSSFPADSPK-PVPLA 626
           SPT +  + SP  A  ++ +  +S P +SPK P P++
Sbjct: 41  SPTKSPAVTSPTTAPAKTPTASASSPVESPKSPAPVS 77


>At3g47910.1 68416.m05224 expressed protein low similarity to
            nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
            GI:189036; contains Pfam profiles PF04780: Protein of
            unknown function (DUF629), PF04781: Protein of unknown
            function (DUF627)
          Length = 1290

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 399  TLGTKHRAPADIIDRAPLPPNRVSNETMKVVV 494
            T+G+ HR+ AD ++ +PLP   V + +   +V
Sbjct: 972  TIGSDHRSNADSVEHSPLPVAPVGDHSEADIV 1003


>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
           protein 
          Length = 987

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +3

Query: 426 ADIIDRAPLP-PNRVSNETMKVVVFQRRSAKRSPTYATPLMSPYNARLES 572
           AD   R+P   P R  +++   + ++RR  +RSPTY+ P   P + R  S
Sbjct: 503 ADQKSRSPSKSPARSRSKSKSPISYRRR--RRSPTYSPPFRRPRSHRSRS 550


>At1g67340.1 68414.m07665 zinc finger (MYND type) family protein /
           F-box family protein
          Length = 379

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +3

Query: 393 LCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSAK 515
           LC LG+  R PAD I+   L   R+    M  +V  R S K
Sbjct: 56  LCKLGSTSRCPADFIN-VLLTCKRLKGLAMNPIVLSRLSPK 95


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,907,340
Number of Sequences: 28952
Number of extensions: 335473
Number of successful extensions: 846
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)