Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0064
         (706 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50200.1 68414.m05629 aminoacyl-tRNA synthetase family protei...    93   1e-19
At5g22800.1 68418.m02666 aminoacyl-tRNA synthetase family protei...    44   1e-04
At1g08550.1 68414.m00948 violaxanthin de-epoxidase precursor, pu...    30   1.7  
At1g22000.1 68414.m02752 F-box family protein contains F-box dom...    29   4.0  
At1g49360.1 68414.m05533 F-box family protein contains Pfam PF00...    28   5.2  
At2g37370.1 68415.m04583 hypothetical protein                          28   6.9  
At3g16210.1 68416.m02046 F-box family protein contains F-box dom...    27   9.2  

>At1g50200.1 68414.m05629 aminoacyl-tRNA synthetase family protein
           contains Pfam profiles: PF01411 tRNA synthetases class
           II (A), PF02272 DHHA1 domain
          Length = 1003

 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 43/73 (58%), Positives = 50/73 (68%)
 Frame = +3

Query: 3   VIQNKRANYDTDFFMPIFKAIENATGVRPYSGKXXXXXXXXXXMAYRVLADHARTLTIAL 182
           V+QNK +NYDTD FMPIF  I+ ATG RPYSGK          MAYRV+ADH RTL+ A+
Sbjct: 303 VLQNKMSNYDTDVFMPIFDDIQKATGARPYSGKVGPEDVDRVDMAYRVVADHIRTLSFAI 362

Query: 183 SDGGCPDNTGRGY 221
           +DG  P N GR Y
Sbjct: 363 ADGSRPGNEGREY 375



 Score = 68.9 bits (161), Expect = 3e-12
 Identities = 37/86 (43%), Positives = 50/86 (58%)
 Frame = +2

Query: 263 EKLNAKPGFFGSLVYTVVELLGDVFPEIKKDPDSIVHVINEEEVQFLKTLLRGRNLLYRT 442
           E L A+ GFF  LV +V+ ++GDVF E+K+    I  +I EEE  F KTL +G    +R 
Sbjct: 390 EILKAEEGFFNGLVSSVIRVMGDVFTELKEHEKKITDIIKEEEASFCKTLAKGIE-KFRK 448

Query: 443 IEKLNNSKTLPGDVAWRLYDTYDFLL 520
             +     TL GD A+ L+DTY F L
Sbjct: 449 AGQAVQGNTLSGDDAFILWDTYGFPL 474



 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 17/30 (56%), Positives = 26/30 (86%)
 Frame = +1

Query: 511 FPIDLTQLMCEEKGLNVDMEGYEKSRKESQ 600
           FP+DLTQLM EE+GL VD++G+ K+ +E++
Sbjct: 472 FPLDLTQLMAEERGLLVDVDGFNKAMEEAR 501


>At5g22800.1 68418.m02666 aminoacyl-tRNA synthetase family protein
           contains Pfam profiles: PF01411 tRNA synthetases class
           II (A), PF02272 DHHA1 domain
          Length = 978

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
 Frame = +2

Query: 272 NAKPGFFGSLVYTVVELLGDVFPEIKKDPDSIVHVINEEEVQFLKTLLRGRNLLYRTI-- 445
           N K  F  ++   V+EL   +  ++K     I+  I +EE+ F KTL RG  LL + +  
Sbjct: 398 NLKGAFLPAVAEKVIELSTYIDSDVKLKASRIIEEIRQEELHFKKTLERGEKLLDQKLND 457

Query: 446 -----EKLNNSKTLPGDVAWRLYDTYDF 514
                +K  ++  L G  A+ LYDT+ F
Sbjct: 458 ALSIADKTKDTPYLDGKDAFLLYDTFGF 485



 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 23/73 (31%), Positives = 32/73 (43%)
 Frame = +3

Query: 3   VIQNKRANYDTDFFMPIFKAIENATGVRPYSGKXXXXXXXXXXMAYRVLADHARTLTIAL 182
           ++Q    NY+TD   PI   I     +   S             + +V+ADH R +   +
Sbjct: 307 ILQKVPNNYETDLIYPIIAKISELANISYDSANDKAKT------SLKVIADHMRAVVYLI 360

Query: 183 SDGGCPDNTGRGY 221
           SDG  P N GRGY
Sbjct: 361 SDGVSPSNIGRGY 373



 Score = 33.9 bits (74), Expect = 0.11
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = +1

Query: 511 FPIDLTQLMCEEKGLNVDMEGYEKSRKESQLVSQ 612
           FP+++T  + EE+G+++DM G+E   +  +  SQ
Sbjct: 485 FPVEITAEVAEERGVSIDMNGFEVEMENQRRQSQ 518


>At1g08550.1 68414.m00948 violaxanthin de-epoxidase precursor,
           putative (AVDE1) similar to EST gb|N37612
          Length = 462

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/54 (25%), Positives = 29/54 (53%)
 Frame = +2

Query: 242 KSCANASEKLNAKPGFFGSLVYTVVELLGDVFPEIKKDPDSIVHVINEEEVQFL 403
           K      E++  +    G    T+ + L + F E+K+D ++ V  +++EE++FL
Sbjct: 385 KEVEEIEEEVEKEVEKVGRTEMTLFQRLAEGFNELKQDEENFVRELSKEEMEFL 438


>At1g22000.1 68414.m02752 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 727

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = -1

Query: 664 LIACTSNAIKSSWLRFFLVKLIEILFWIFHNLPCLH*DPFLHTLIESNQ*EIVSI 500
           ++AC  NAIK SWL  F    I ++ W+   +  L   P L T    N  E +S+
Sbjct: 319 MVACC-NAIKFSWLIEFYFFPISLVDWLMPLMFLLQNSPKLKTPTIDNDFECLSL 372


>At1g49360.1 68414.m05533 F-box family protein contains Pfam
           PF00646: F-box domain
          Length = 481

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
 Frame = -2

Query: 423 LPRNRVFKNCTSSSFMTCTMESGSFLISGKTSPSNSTTV*TKDPKNPGLAFNFSDAFAQL 244
           LPRNR+ ++  ++   +C     S L+ G  + S+S  +       PG      + F  L
Sbjct: 225 LPRNRIMESVHTNFAFSCAPTKKSCLVFGINNISSSVAI-KISTWRPGATTWLHEDFPNL 283

Query: 243 FSKFYEE--RILY 211
           F  ++     ILY
Sbjct: 284 FPSYFRRLGNILY 296


>At2g37370.1 68415.m04583 hypothetical protein
          Length = 697

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -2

Query: 330 SPSNSTTV*TKDPKNPGLAFNFSDAFAQLFSKFYEERILYLCYQG-NHHLIKQLLE 166
           SP N +TV   DP  PG    F D F  L S+  E  +L +  +  N   ++ LLE
Sbjct: 115 SPKNFSTVYYVDPGLPGEPMTFRDVF--LHSEALEGMVLSMILEAPNEEEVQLLLE 168


>At3g16210.1 68416.m02046 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 360

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -2

Query: 288 NPGLAFNFSDAFAQLFSKFYEERILYLCYQGNHHLIKQLLEF 163
           +PG    + D     F  FY++    L  +G H +I   L+F
Sbjct: 38  DPGFTETYRDMSPAKFVSFYDKNFYMLDVEGKHPVITNKLDF 79


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,440,335
Number of Sequences: 28952
Number of extensions: 279161
Number of successful extensions: 643
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)