Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0062
         (708 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g55090.1 68416.m06118 ABC transporter family protein ATP-bind...    30   1.3  
At1g30480.1 68414.m03726 DNA-damage-repair/toleration protein, c...    30   1.3  
At2g04030.2 68415.m00372 heat shock protein, putative strong sim...    29   2.3  
At2g04030.1 68415.m00371 heat shock protein, putative strong sim...    29   2.3  
At1g35830.1 68414.m04452 VQ motif-containing protein contains PF...    28   5.3  
At1g17240.1 68414.m02100 leucine-rich repeat family protein cont...    27   9.2  

>At3g55090.1 68416.m06118 ABC transporter family protein ATP-binding
           cassette-sub-family G-member 2, Mus musculus,
           EMBL:AF140218
          Length = 720

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 625 AVACGRALIGGGDEDSVVREGGGAIATP 542
           +++ G+ + GGG   SV+  GGG +A P
Sbjct: 379 SISRGKLVSGGGGGSSVINHGGGTLAVP 406


>At1g30480.1 68414.m03726 DNA-damage-repair/toleration protein,
           chloroplast (DRT111) nearly identical to SP|P42698
           DNA-damage-repair/toleration protein DRT111, chloroplast
           precursor {Arabidopsis thaliana}; contains Pfam profiles
           PF01585: G-patch domain, PF00076: RNA recognition motif.
           (a.k.a. RRM, RBD, or RNP domain)
          Length = 387

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 325 NVANEYDPMWPNDYEKVAKELQAK 396
           +V  EYDP  PNDYE+  +E + K
Sbjct: 97  SVIEEYDPARPNDYEEYKREKKRK 120



 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 627 SAGFSIGGYGASSVAAKIMAKYGFKEG 707
           ++G  +G  G  + A ++MAK G+K+G
Sbjct: 204 TSGLGVGAGGQMTAAQRMMAKMGWKQG 230


>At2g04030.2 68415.m00372 heat shock protein, putative strong
           similarity to heat shock protein [Arabidopsis thaliana]
           GI:1906830; contains Pfam profiles PF02518: ATPase,
           histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein, PF00183: Hsp90 protein
          Length = 777

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 277 QPKTITASLNVRDFDWNVANEYDPMWPNDYEKVAK 381
           +PK    +   + +DW +ANE  P+W  + ++V K
Sbjct: 311 EPKKKKTTKTEKYWDWELANETKPLWMRNSKEVEK 345


>At2g04030.1 68415.m00371 heat shock protein, putative strong
           similarity to heat shock protein [Arabidopsis thaliana]
           GI:1906830; contains Pfam profiles PF02518: ATPase,
           histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein, PF00183: Hsp90 protein
          Length = 780

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 277 QPKTITASLNVRDFDWNVANEYDPMWPNDYEKVAK 381
           +PK    +   + +DW +ANE  P+W  + ++V K
Sbjct: 311 EPKKKKTTKTEKYWDWELANETKPLWMRNSKEVEK 345


>At1g35830.1 68414.m04452 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 302

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -3

Query: 472 LCLHHHQTCSFVSYPTCLLCHLTEASLLAILLQLFHNH*ATLGHIH 335
           L LHHH T + +++P   L    + S    LL   H+H  TL  +H
Sbjct: 178 LNLHHHTT-TSMTFPDLPLPQTHQVSTFQSLLSHQHHHQPTLSSLH 222


>At1g17240.1 68414.m02100 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
           esculentum] gi|3894387|gb|AAC78593
          Length = 729

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -1

Query: 459 ITKPALSFPIQPVSSVI*LKPLCLQFFCNFFIII 358
           + +P ++ P+QP+SS + L  LC+ F    F+ +
Sbjct: 8   LVRPLITKPVQPLSSHMHLFLLCILFLSALFLTL 41


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,090,370
Number of Sequences: 28952
Number of extensions: 213290
Number of successful extensions: 506
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)