Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0048
(746 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g12230.1 68414.m01415 transaldolase, putative similar to Swis... 76 3e-14
At3g13210.1 68416.m01653 crooked neck protein, putative / cell c... 31 0.61
At1g68380.1 68414.m07811 expressed protein contains Pfam profile... 30 1.4
At3g25130.1 68416.m03138 expressed protein 29 2.5
At1g15060.1 68414.m01800 expressed protein 29 2.5
At5g43190.1 68418.m05276 F-box family protein (FBX6) contains si... 29 3.3
At4g09560.1 68417.m01571 protease-associated zinc finger (C3HC4-... 29 3.3
At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein ... 29 3.3
At1g51670.1 68414.m05821 expressed protein 29 4.3
At4g36380.1 68417.m05169 cytochrome P450 90C1 (CYP90C1) / rotund... 28 7.6
At1g74170.1 68414.m08590 leucine-rich repeat family protein cont... 28 7.6
At5g35995.1 68418.m04334 F-box family protein contains F-box dom... 27 10.0
At3g55660.1 68416.m06184 expressed protein contains Pfam profile... 27 10.0
>At1g12230.1 68414.m01415 transaldolase, putative similar to
Swiss-Prot:P30148 transaldolase B (EC 2.2.1.2)
[Escherichia coli O157:H7]
Length = 405
Score = 75.8 bits (178), Expect = 3e-14
Identities = 36/91 (39%), Positives = 59/91 (64%)
Frame = +1
Query: 235 FGYAECAFGCEILKIIPGRVSVEVDARLSFDKDASIAKAIKFINLFAEHGIKKERILIKL 414
F A G +++K++PGRVS EVDARL++D + I K + L+ E + +R+L K+
Sbjct: 143 FNKAIVNVGGDLVKLVPGRVSTEVDARLAYDTNGIIRKVHDLLRLYNEIDVPHDRLLFKI 202
Query: 415 ASTWEGIQAAKELEKKHGIHCNLTLLFSLYQ 507
+TW+GI+AA+ LE + GI ++T ++S Q
Sbjct: 203 PATWQGIEAARLLESE-GIQTHMTFVYSFAQ 232
Score = 35.9 bits (79), Expect = 0.029
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Frame = +3
Query: 489 VVLFVPSIACAEANVTLISPFVGRILDWYVEHTKKT-----YEGQEDPGVVSVTKFTTIT 653
V F + A ++A ++I FVGR+ DW H+ T + EDPG+ V +
Sbjct: 227 VYSFAQAAAASQAGASVIQIFVGRLRDWARNHSGDTEIESAIKSGEDPGLALVKRSYNYI 286
Query: 654 RSLVTRPK*WVHLFRNTGEIRELAGCD 734
+ K RN ++ L G D
Sbjct: 287 HKYGYKSKLMAAAVRNKQDLFSLLGVD 313
>At3g13210.1 68416.m01653 crooked neck protein, putative / cell
cycle protein, putative similar to Swiss-Prot:P17886
crooked neck protein [Drosophila melanogaster]
Length = 657
Score = 31.5 bits (68), Expect = 0.61
Identities = 20/71 (28%), Positives = 33/71 (46%)
Frame = +2
Query: 29 LDQLKQHSTVVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHILDKAIKYGKDNGS 208
LD+ K H V D FEA D ++ G+++ + I D+A Y KD+
Sbjct: 510 LDRTK-HCKVWVDFAKFEASAAEHKEDEEEEDAIERKKDGIKRAREIFDRANTYNKDSTP 568
Query: 209 SIEEQVAETLD 241
++E+ A L+
Sbjct: 569 ELKEERAMLLE 579
>At1g68380.1 68414.m07811 expressed protein contains Pfam profile
PF03267: Arabidopsis protein of unknown function, DUF266
Length = 392
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/30 (43%), Positives = 23/30 (76%), Gaps = 3/30 (10%)
Frame = +1
Query: 499 LYQVLPVLKQMLH*YHHLLV---VYWIGML 579
L QV+ +LK++LH +H+LL+ + WIG++
Sbjct: 11 LSQVIELLKKLLHHFHNLLLYFFILWIGVI 40
>At3g25130.1 68416.m03138 expressed protein
Length = 406
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -1
Query: 410 LIKILSFLIPCSANKLINLIAFAMLASLSNDNLASTSTDTRPGIIFN 270
+ KILSFL P + L+A + + L S S +T+P +F+
Sbjct: 52 IFKILSFLSPLFVTTTLLLLALLSTLHVQDTCLDSESLETQPSFLFS 98
>At1g15060.1 68414.m01800 expressed protein
Length = 578
Score = 29.5 bits (63), Expect = 2.5
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Frame = +2
Query: 11 RTKMSALDQLKQHSTVVADTGDF--EAMKEYKPTDATTNPSLI----LSAAGMEQYQHIL 172
R+K+ +L + KQ+S +V D + + + +P LI A +E +Q L
Sbjct: 262 RSKLLSLIESKQNSGLVNQVRDLAQRLVNLFDDGQRSVSPPLIDLQERLTATIEDFQKQL 321
Query: 173 DKAIKYGKDNGSSIEEQVAETLDMLSVLLGVKY*KLFLV 289
D +KY D +EE V ++ + K KLF +
Sbjct: 322 DLIVKYDWDFDHYLEEDVPAAIEYVRAQSKPKDGKLFAI 360
>At5g43190.1 68418.m05276 F-box family protein (FBX6) contains
similarity to unusual floral organs (UFO) GI:4376159
from [Arabidopsis thaliana]
Length = 403
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/73 (19%), Positives = 38/73 (52%)
Frame = -1
Query: 428 SQVEANLIKILSFLIPCSANKLINLIAFAMLASLSNDNLASTSTDTRPGIIFNISHPKAH 249
S + +L++ + L+P + I+ + + + + + S + + P + +SHP++
Sbjct: 49 SNLPNHLLEHILSLLPFKTLLTLRSISRHLRSLILSPSFISDHSFSLPSFLL-LSHPQSF 107
Query: 248 SAYPKFQPLVLQW 210
+++P F P ++ W
Sbjct: 108 NSFPLFNPNLISW 120
>At4g09560.1 68417.m01571 protease-associated zinc finger
(C3HC4-type RING finger) family protein contains Pfam
domain, PF02225: protease-associated (PA) domain and
Pfam domain, PF00097: Zinc finger, C3HC4 type (RING
finger); similar to ReMembR-H2 protein JR702
[Arabidopsis thaliana] gi|6942149|gb|AAF32326
Length = 431
Score = 29.1 bits (62), Expect = 3.3
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = +1
Query: 232 NFGYAECAFGCEILKIIPGRVSVEVDARLSFDKDASIAKAIKFINLFA 375
+FG+ G E+LK GR EV SF+ A AI FI+L A
Sbjct: 113 DFGFLVSTTG-EVLKEYAGRTDFEVWLMPSFETSAWSIMAISFISLLA 159
>At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 1230
Score = 29.1 bits (62), Expect = 3.3
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Frame = +2
Query: 44 QHSTVVADTGDFEAMKEYKPTDATTNPSLILS----AAGMEQYQHILDKAIKYGKDNGSS 211
Q++TV AD G+ K + D T S+ ++ A + Q H LD K +
Sbjct: 823 QYNTVRAD-GNHNTTKTLE--DETNGGSVSINGSVHAPNLNQESHFLDFPSPTPKSSPED 879
Query: 212 IEEQVAETLDMLSVLLGVK 268
+E Q AET+ LS + VK
Sbjct: 880 LEAQAAETIQSLSSCVLVK 898
>At1g51670.1 68414.m05821 expressed protein
Length = 178
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +2
Query: 374 LNMVLKKKEF*L--NWPPLGKEFKQPKSWRRSMESI 475
LN LKK +WPPLG E K P S+ ++ S+
Sbjct: 85 LNFALKKGGIPRAEDWPPLGSESKTPSSYEPALVSM 120
>At4g36380.1 68417.m05169 cytochrome P450 90C1 (CYP90C1) /
rotundifolia3 (ROT3) identical to Cytochrome P450 90C1
(ROTUNDIFOLIA3) (SP:Q9M066) [Arabidopsis thaliana];
Length = 524
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = +2
Query: 56 VVADTGDFEAMKEYKPTDATTNPSLILSAAGMEQYQHILDKAIKYGKDNGSSIEEQVAET 235
++ D GD E K+ +P+D + + + G E + A+K+ DN ++ + V E
Sbjct: 295 LLRDGGDSE--KQSQPSDFVSGKIVEMMIPGEETMPTAMTLAVKFLSDNPVALAKLVEEN 352
Query: 236 LDM 244
++M
Sbjct: 353 MEM 355
>At1g74170.1 68414.m08590 leucine-rich repeat family protein contains
leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
pimpinellifolium] gi|1184077|gb|AAC15780
Length = 1068
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/58 (18%), Positives = 28/58 (48%)
Frame = +3
Query: 150 WNSISTFLIKLLNMERIMEAPLKNKWLKLWIC*VCFWV*NIKNYSWSSISGS*CKVII 323
W+ ++ ++ LL + + + W + W V +V ++N W + +G+ C ++
Sbjct: 990 WSFVAAYVTILLGI--LASLSFDSPWSRAWFYIVDAFVLKVRNMLWQNTAGTKCSYVL 1045
>At5g35995.1 68418.m04334 F-box family protein contains F-box domain
Pfam:PF00646
Length = 455
Score = 27.5 bits (58), Expect = 10.0
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -3
Query: 147 PAAESIKLGFVVASVGLYSFMASKSPV 67
PA +++ LG VVA LY+++ S PV
Sbjct: 153 PALKTLSLGAVVAKPALYNWLISGCPV 179
>At3g55660.1 68416.m06184 expressed protein contains Pfam profile
PF03759: Domain of unknown function (DUF315)
Length = 579
Score = 27.5 bits (58), Expect = 10.0
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 161 QHILDKA-IKYGKDNGSSIEEQVAETLDMLSVLLGVK 268
Q LD + I+Y KD G SI E + L+ L+ +GV+
Sbjct: 425 QTALDTSKIQYNKDVGKSILESYSRVLESLAYSIGVR 461
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,525,805
Number of Sequences: 28952
Number of extensions: 389360
Number of successful extensions: 1034
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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