Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0047
(284 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ... 29 0.66
At5g42370.1 68418.m05159 expressed protein 29 0.66
At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identic... 29 0.66
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox... 28 0.87
At5g22390.1 68418.m02612 expressed protein 27 1.5
At3g56510.1 68416.m06284 TBP-binding protein, putative similar t... 27 2.0
At2g05210.1 68415.m00549 expressed protein 27 2.0
At2g03890.2 68415.m00352 phosphatidylinositol 3- and 4-kinase fa... 27 2.0
At2g03890.1 68415.m00351 phosphatidylinositol 3- and 4-kinase fa... 27 2.0
At3g02270.1 68416.m00208 eIF4-gamma/eIF5/eIF2-epsilon domain-con... 27 2.7
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P... 26 3.5
At3g04340.1 68416.m00459 FtsH protease family protein similar to... 26 3.5
At1g60230.1 68414.m06783 radical SAM domain-containing protein ... 26 3.5
At3g60510.1 68416.m06768 enoyl-CoA hydratase/isomerase family pr... 26 4.6
At3g44430.1 68416.m04774 expressed protein 26 4.6
At1g67560.1 68414.m07697 lipoxygenase family protein similar to ... 26 4.6
At4g39970.1 68417.m05661 haloacid dehalogenase-like hydrolase fa... 25 6.1
At3g55810.1 68416.m06201 pyruvate kinase, putative similar to py... 25 6.1
At3g19190.1 68416.m02436 expressed protein 25 6.1
At1g76470.1 68414.m08895 cinnamoyl-CoA reductase family similar ... 25 6.1
At5g54180.1 68418.m06746 mitochondrial transcription termination... 25 8.1
At4g28560.1 68417.m04085 leucine-rich repeat family protein (fra... 25 8.1
At1g27100.1 68414.m03303 expressed protein contains Pfam profil... 25 8.1
At1g17420.1 68414.m02128 lipoxygenase, putative similar to lipox... 25 8.1
At1g05470.1 68414.m00556 endonuclease/exonuclease/phosphatase fa... 25 8.1
>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
Pfam profile PF00899: ThiF family
Length = 697
Score = 28.7 bits (61), Expect = 0.66
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -3
Query: 246 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRR 112
P ++G CG +V NH++LL +S+ L+ ++S +R +
Sbjct: 42 PISITGFYGPCGHPQVSNHLTLLSESLPLDEQSLIASTSHGNRNK 86
>At5g42370.1 68418.m05159 expressed protein
Length = 447
Score = 28.7 bits (61), Expect = 0.66
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -1
Query: 185 PFYRIPWNSNAQAEKKTLPGPLGGVFRPL-WVTPSNTR 75
P Y + + Q+ +K +P PL + R L W TPS R
Sbjct: 285 PLYDVTSSGLVQSVEKVVPRPLRSIVRLLFWYTPSTMR 322
>At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identical
to low affinity calcium antiporter CAX2 (GI:1488267)
[Arabidopsis thaliana]; Ca2+:Cation Antiporter (CaCA)
Family member PMID:11500563
Length = 441
Score = 28.7 bits (61), Expect = 0.66
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +3
Query: 48 SIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFC--LSVRVPWNPI 179
S++ SL TS + PK P+++ S K +FC L++ +P+ P+
Sbjct: 41 SLMEQGSLSTSFPQHTPKAPKNSVLNSIKIVIFCNKLNLLLPFGPL 86
>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
[Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
thaliana]
Length = 926
Score = 28.3 bits (60), Expect = 0.87
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2
Query: 241 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 143
+S + P R ++PYLPS G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247
>At5g22390.1 68418.m02612 expressed protein
Length = 202
Score = 27.5 bits (58), Expect = 1.5
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 120 ERSGKSFLFCLSVRVPWNPIEG 185
+ S KSFL LS PWNP +G
Sbjct: 17 DNSPKSFLDTLSSSSPWNPSKG 38
>At3g56510.1 68416.m06284 TBP-binding protein, putative similar to
TBP-binding protein ABT1 GI:6518527 from [Mus musculus]
Length = 257
Score = 27.1 bits (57), Expect = 2.0
Identities = 17/68 (25%), Positives = 28/68 (41%)
Frame = -1
Query: 212 VLFAFRTISPFYRIPWNSNAQAEKKTLPGPLGGVFRPLWVTPSNTRF*RRGNDY*NGSAA 33
+L + + Y P +S AQ +K G G F WV + +R D NG
Sbjct: 69 ILAQYGELGRIYLAPEDSEAQVHRKRAGGFRGQRFSEGWVEFAKKSVAKRVADMLNGEQI 128
Query: 32 GFRNRNRI 9
G + ++ +
Sbjct: 129 GGKKKSSV 136
>At2g05210.1 68415.m00549 expressed protein
Length = 364
Score = 27.1 bits (57), Expect = 2.0
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = -2
Query: 241 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPR 86
+S T C+ +E Y +GF T TLR+KR L S +F PR
Sbjct: 282 DSTATLEAFLCNKDAE-YFWGLGFQDTETLRKKRNWL--LGIRESSNFVAPR 330
>At2g03890.2 68415.m00352 phosphatidylinositol 3- and 4-kinase
family protein low similarity to phosphatidylinositol
4-kinase type-II beta [Homo sapiens] GI:20159767;
contains Pfam profile PF00454: Phosphatidylinositol 3-
and 4-kinase
Length = 530
Score = 27.1 bits (57), Expect = 2.0
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -3
Query: 168 MELERSGRKENSSRTSRRRLQATLGYPVEHSFLKTRERLL 49
MEL+RS ++ T +RRLQ L +P E S L + +L
Sbjct: 60 MELDRS----DNVHTVKRRLQIALNFPTEESSLTYGDMVL 95
>At2g03890.1 68415.m00351 phosphatidylinositol 3- and 4-kinase
family protein low similarity to phosphatidylinositol
4-kinase type-II beta [Homo sapiens] GI:20159767;
contains Pfam profile PF00454: Phosphatidylinositol 3-
and 4-kinase
Length = 650
Score = 27.1 bits (57), Expect = 2.0
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -3
Query: 168 MELERSGRKENSSRTSRRRLQATLGYPVEHSFLKTRERLL 49
MEL+RS ++ T +RRLQ L +P E S L + +L
Sbjct: 60 MELDRS----DNVHTVKRRLQIALNFPTEESSLTYGDMVL 95
>At3g02270.1 68416.m00208 eIF4-gamma/eIF5/eIF2-epsilon
domain-containing protein similar to SP|Q13144
Translation initiation factor eIF-2B epsilon subunit
(eIF-2B GDP-GTP exchange factor) {Homo sapiens};
contains Pfam profile PF02020:
eIF4-gamma/eIF5/eIF2-epsilon
Length = 676
Score = 26.6 bits (56), Expect = 2.7
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 202 RSEPYLPSIGFHGTRTLRQKRK 137
R+ PY+P + F G RTL+ +R+
Sbjct: 288 RTFPYVPDMKFSGNRTLKLERQ 309
>At5g56500.1 68418.m07051 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 597
Score = 26.2 bits (55), Expect = 3.5
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -2
Query: 226 PPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHF 98
PP R SS + S F T+++ Q++ FP + AA HF
Sbjct: 17 PPSNRLSSFVS--ISSSSFGRTQSIAQRKARFPKIYAAKQLHF 57
>At3g04340.1 68416.m00459 FtsH protease family protein similar to
chloroplast FtsH protease [Arabidopsis thaliana]
GI:1483215; contains Pfam profiles PF01434: Peptidase
family M41, PF00004: ATPase AAA family
Length = 960
Score = 26.2 bits (55), Expect = 3.5
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +3
Query: 39 GTVSIIVPSSLKTSVRRGNPKWPEDA 116
G ++VP +++ +R G KW E+A
Sbjct: 81 GEKEVVVPKAIQLHLRHGWKKWQEEA 106
>At1g60230.1 68414.m06783 radical SAM domain-containing protein
contains Pfam profile PF04055: radical SAM domain
protein
Length = 458
Score = 26.2 bits (55), Expect = 3.5
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 133 FPDLSAASSGHFGLPRRTLVFKDEGTIIETVPLP 32
F D+ +AS G R+ L D+G +IETV +P
Sbjct: 161 FKDIRSASDG----TRKILFTLDDGLVIETVVIP 190
>At3g60510.1 68416.m06768 enoyl-CoA hydratase/isomerase family
protein similar to enoyl-CoA-hydratase, Avicennia
marina, EMBL:AF190450 [GI:6014701], CoA-thioester
hydrolase CHY1 from Arabidopsis thaliana [GI:8572760];
contains Pfam profile PF00378 enoyl-CoA
hydratase/isomerase family protein
Length = 401
Score = 25.8 bits (54), Expect = 4.6
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -3
Query: 174 DSMELERSGRKENSSRTSRRRLQATLGYPVEHSFLKTRE-RLLKRFRCRVPE 22
DS+E+E S RK+ T+ RRL+ + ++ + RE RL +C + E
Sbjct: 280 DSLEIEASRRKDTWCITTLRRLKESSPLSLKVALRSIREGRLQTLDQCLIRE 331
>At3g44430.1 68416.m04774 expressed protein
Length = 206
Score = 25.8 bits (54), Expect = 4.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 273 VHPSPEFQGPQRVSGHRRKCG 211
+ PSP F G Q+ S R+CG
Sbjct: 48 ISPSPVFNGGQKTSYGGRRCG 68
>At1g67560.1 68414.m07697 lipoxygenase family protein similar to
13-lipoxygenase GB:CAA65269 [Solanum tuberosum],
gi:1654140 [Lycopersicon esculentum]
Length = 917
Score = 25.8 bits (54), Expect = 4.6
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -2
Query: 223 PQMRCSSRSEPYLPSIGFHGTRTLRQK 143
PQ R RS+P LPS G + LR+K
Sbjct: 209 PQARIIFRSQPCLPSETPDGIKELREK 235
>At4g39970.1 68417.m05661 haloacid dehalogenase-like hydrolase
family protein low similarity to SP|P95649 CbbY protein
{Rhodobacter sphaeroides}
Length = 316
Score = 25.4 bits (53), Expect = 6.1
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = -2
Query: 178 IGFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT---LVFKDEGTIIET 44
IGF +TLR K + S SS LP R+ L+F +G I+E+
Sbjct: 30 IGFPRFQTLRFKSRSVYSKSRVSSPVSALPLRSLEALIFDCDGVILES 77
>At3g55810.1 68416.m06201 pyruvate kinase, putative similar to
pyruvate kinase, cytosolic isozyme [Nicotiana tabacum]
SWISS-PROT:Q42954
Length = 492
Score = 25.4 bits (53), Expect = 6.1
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = -3
Query: 168 MELERSGRKENSSRTSRRRLQATLGYPVEHSFLKTRERLLK 46
ME+ GR N + S+ ++ TLG PV S ++ E+LLK
Sbjct: 1 MEMLLGGRATNGALRSKTKIVCTLG-PVSRS-VEMIEKLLK 39
>At3g19190.1 68416.m02436 expressed protein
Length = 1861
Score = 25.4 bits (53), Expect = 6.1
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 21 IPEPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAER 125
+P+ G + + P +T +RRGN W +DA+ R
Sbjct: 1361 VPQEGDSSGRELFP---ETDLRRGNSGWYDDASLR 1392
>At1g76470.1 68414.m08895 cinnamoyl-CoA reductase family similar to
cinnamoyl-CoA reductase GB:CAA56103 [Eucalyptus gunnii],
Pinus taeda [GI:17978649]; contains non-consensus GG
acceptor splice site at exon 4
Length = 317
Score = 25.4 bits (53), Expect = 6.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 51 IIVPSSLKTSVRRGNPKWPEDAAE 122
++V SS+ V NPKWP+D A+
Sbjct: 116 VVVVSSIAAVVY--NPKWPQDVAK 137
>At5g54180.1 68418.m06746 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 500
Score = 25.0 bits (52), Expect = 8.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 153 SGRKENSSRTSRRRLQATLGYPVEH 79
SG + ++ T RRL A L Y VEH
Sbjct: 261 SGEDDFATGTVLRRLPAILSYSVEH 285
>At4g28560.1 68417.m04085 leucine-rich repeat family protein
(fragment) contains leucine rich-repeat domains
Pfam:PF00560, INTERPRO:IPR001611;
Length = 450
Score = 25.0 bits (52), Expect = 8.1
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -2
Query: 145 KRKLFPDLSAASSGHFGLPRRTLVFKDEGTIIETVPLPGSGIGTGFP 5
K+ +F DLS G+FG+P +F E + + V L G+ +G P
Sbjct: 274 KKLVFLDLSYNRFGNFGVP----LFLAEMSSLREVHLSGNKLGGRIP 316
>At1g27100.1 68414.m03303 expressed protein contains Pfam profile:
PF04601 protein of unknown function (DUF569
Length = 519
Score = 25.0 bits (52), Expect = 8.1
Identities = 10/40 (25%), Positives = 17/40 (42%)
Frame = +1
Query: 25 RNPAAEPFQ*SFPRL*KRVFDGVTQSGLKTPPRGPGRVFF 144
R P + P PR + D +++PP+ GR +
Sbjct: 400 RRPTSSPLSAESPRTSSSLSDRSDSDSVESPPKSDGRTIY 439
>At1g17420.1 68414.m02128 lipoxygenase, putative similar to
lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
[Lycopersicon esculentum]
Length = 919
Score = 25.0 bits (52), Expect = 8.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 241 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 143
+S + P R ++PYLP+ G R LR+K
Sbjct: 209 QSQKDHPDKRIFFTNQPYLPNETPSGLRVLREK 241
>At1g05470.1 68414.m00556 endonuclease/exonuclease/phosphatase
family protein simlar to inositol polyphosphate
5-phosphatase I (GI:10444261) and II (GI:10444263)
[Arabidopsis thaliana]; contains Pfam profile PF03372:
Endonuclease/Exonuclease/phosphatase family
Length = 585
Score = 25.0 bits (52), Expect = 8.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -1
Query: 179 YRIPWNSNAQAEKKTLPGPLGGVFRPLWV 93
YRIPWNS+ + GVF +WV
Sbjct: 308 YRIPWNSSQYC--LVASKQMVGVFLTIWV 334
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,775,175
Number of Sequences: 28952
Number of extensions: 134140
Number of successful extensions: 426
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 251821800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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