Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0045
         (630 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61320.1 68418.m07695 cytochrome P450, putative Similar to  C...    28   4.4  
At2g31440.1 68415.m03841 expressed protein identical to cDNA end...    28   5.9  
At1g30840.1 68414.m03771 purine permease-related low similarity ...    27   7.8  

>At5g61320.1 68418.m07695 cytochrome P450, putative Similar to
           Cytochrome P450 89A2 (SP:Q42602)[Arabidopsis thaliana];
           contains Pfam profile: PF00067 cytochrome P450
          Length = 497

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +3

Query: 243 GATCRFIRRN*AKP--PPLCVRSLSNASKEFALSLCSR 350
           GAT R +RRN       P  V+S SNA +    +LCSR
Sbjct: 124 GATWRLLRRNLTSEILHPSRVKSYSNARRSVLENLCSR 161


>At2g31440.1 68415.m03841 expressed protein identical to cDNA
           endonuclease III homologue (nth1 gene) GI:11181951
          Length = 250

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 170 LRANKWWLYAWIFFTVVC 117
           L+AN WW YA +  T VC
Sbjct: 59  LKANVWWPYALLVITSVC 76


>At1g30840.1 68414.m03771 purine permease-related low similarity to
           purine permease [Arabidopsis thaliana] GI:7620007;
           contains Pfam profiles PF03151: Domain of unknown
           function, DUF250, PF00892: Integral membrane protein
          Length = 382

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 7   LKTITRNVFKNFKMKTLIFIMLVACVASXRTVLW 108
           LKT TR  F  F ++ LIF +L+  V      L+
Sbjct: 82  LKTTTRRPFTRFTLRHLIFSVLIGLVLGFNNFLF 115


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,172,951
Number of Sequences: 28952
Number of extensions: 267774
Number of successful extensions: 607
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)