Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0044
         (783 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /...    36   0.030
At1g50260.1 68414.m05635 C2 domain-containing protein low simila...    30   1.5  
At2g28990.1 68415.m03526 leucine-rich repeat protein kinase, put...    30   2.0  
At1g76965.1 68414.m08961 glycine-rich protein                          29   2.6  
At2g44900.1 68415.m05589 armadillo/beta-catenin repeat family pr...    28   6.1  

>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
           CAF identical to RNA helicase/RNAseIII CAF protein
           GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
          Length = 1909

 Score = 35.9 bits (79), Expect = 0.030
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +1

Query: 592 GSQMPRHLISDAHEWINEIPTVPNLLSSETTAKGTGLGESAGKED 726
           G  +P + +SD +  INE+   P +++ E T K  GL ++ GK D
Sbjct: 70  GGGLPNNGVSDTNSQINEVTVTPQVIAKE-TVKENGLQKNGGKRD 113


>At1g50260.1 68414.m05635 C2 domain-containing protein low
           similarity to CLB1 [Lycopersicon esculentum] GI:2789434;
           contains Pfam profile PF00168: C2 domain
          Length = 675

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 314 RTRVLRPSADLPSRKVVSVSFRARSARFCTTAVQRSAQN 430
           R+RVLRPS  + + + +S  FR  S     T   R A N
Sbjct: 37  RSRVLRPSVKISNFRFISCGFRGNSKNLRLTDSSRKAAN 75


>At2g28990.1 68415.m03526 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 884

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 297 TFRTGSGPAFSGLPRIFLAVRSCRFRFVRDRHDSVRPPFNGQLRT 431
           T+ T SG       R++L+      R+  D HD +  PFNG   T
Sbjct: 179 TYVTQSGSLMMSF-RVYLSNSDASIRYADDVHDRIWSPFNGSSHT 222


>At1g76965.1 68414.m08961 glycine-rich protein 
          Length = 158

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 190 PGTGRIRFPSKPDTPRSSEPILIPKLRIQFAD 95
           PG   + FP KP+ P    P  +P+L + F D
Sbjct: 93  PGAAIVVFPKKPEEPVKVVPTPMPQLNLFFGD 124


>At2g44900.1 68415.m05589 armadillo/beta-catenin repeat family
           protein / F-box family protein contains similarity to
           F-box protein FBL2 GI:6010699 from [Rattus norvegicus];
           contains Pfam profiles PF00514:
           Armadillo/beta-catenin-like repeat, PF00646: F-box
           domain
          Length = 930

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -3

Query: 166 PSKPDTPRSSEPILI-PKLRIQFADFPYLPYSID*RLFT 53
           PS P+T  S+E  L+ P+L   F D+  LPY    +LFT
Sbjct: 22  PSYPETSISNEEDLVAPELLHGFVDWISLPYDTVLQLFT 60


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,433,506
Number of Sequences: 28952
Number of extensions: 370978
Number of successful extensions: 968
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)