Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0041
         (504 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g43500.1 68415.m05405 RWP-RK domain-containing protein low si...    28   4.1  
At5g63700.1 68418.m07996 zinc finger (C3HC4 type RING finger) fa...    27   9.5  
At4g19970.1 68417.m02924 expressed protein similar to GI:2827651...    27   9.5  

>At2g43500.1 68415.m05405 RWP-RK domain-containing protein low
           similarity to nodule inception protein [Lotus japonicus]
           GI:6448579; contains Pfam profile: PF02042 RWP-RK domain
          Length = 947

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +1

Query: 403 YTKHNITNYPSTTMAENFRCVRADVDTNA 489
           +   +++N+P TT +ENF+ +  D + N+
Sbjct: 519 FRSSDMSNFPQTTSSENFQTISLDSEFNS 547


>At5g63700.1 68418.m07996 zinc finger (C3HC4 type RING finger)
           family protein contains Pfam PF03126: Plus-3 domain;
           contains Pfam PF02201: BAF60b domain of the SWIB
           complex; contains Pfam PF00628: PHD-finger domain;
           contains Prosite Zinc finger, C3HC4 type (RING finger),
           signature; similar to CPRF interacting protein
           (GI:9588690) [Petroselinum crispum]
          Length = 571

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 483 SVYVCSHAPKVLRHCCARVIC 421
           S Y+C   PK+   CC+  +C
Sbjct: 70  SCYLCKKTPKLCCLCCSHAVC 90


>At4g19970.1 68417.m02924 expressed protein similar to GI:2827651,
           GI:7527728, GI:4406788, GI:6063544,  GI:10764853,
           GI:10764852 from [Arabidopsis thaliana]; predicted
           protein PATCHX:E326963
          Length = 715

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +3

Query: 204 YYFFFYHADSSWSTEPGPGANPDG 275
           Y F F  AD  W  +P P   PDG
Sbjct: 552 YNFIFTDADIMWLRDPFPRLYPDG 575


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,557,052
Number of Sequences: 28952
Number of extensions: 173847
Number of successful extensions: 355
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)