Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0246
         (589 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29820.1 68417.m04245 expressed protein                             29   2.3  
At4g12750.1 68417.m02002 expressed protein                             28   4.0  
At3g49970.1 68416.m05464 phototropic-responsive protein, putativ...    28   4.0  
At3g11720.1 68416.m01437 expressed protein                             28   4.0  
At2g21490.1 68415.m02557 dehydrin family protein contains Pfam d...    28   5.3  
At2g25300.1 68415.m03026 galactosyltransferase family protein co...    27   9.3  

>At4g29820.1 68417.m04245 expressed protein
          Length = 222

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = -1

Query: 274 HMLLPQLRNVLFEIPGNSVARGCF*EASNKGLQRINISHQSFN 146
           H+LL Q RN +F++PG  +  G   E+  +GL+R   S  S N
Sbjct: 85  HVLLLQYRNSIFKLPGGRLRPG---ESDIEGLKRKLASKLSVN 124


>At4g12750.1 68417.m02002 expressed protein 
          Length = 1108

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 143  DIEALVGNIDSLKAFIGCFLETSPCDAVSGDFKKDIPELWQKHV 274
            D + L   + SLKA +       P DA+ G ++K    LW K +
Sbjct: 973  DHKVLSSQLQSLKAAVYAIESAMPEDALIGAWRKSAHRLWAKRL 1016


>At3g49970.1 68416.m05464 phototropic-responsive protein, putative
           similar to root phototropism RPT2 [Arabidopsis thaliana]
           gi|6959488|gb|AAF33112, a signal transducer of
           phototropic response PMID:10662859
          Length = 526

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +2

Query: 164 NIDSLKAFIGCFLETSPCDAVSGDFKKDIPELWQKHVANVLQPRNI 301
           ++D+++  +  +LE    +  S DF  DI EL + ++A +   RNI
Sbjct: 298 DVDTVQRILMNYLEFE-VEGNSADFASDIGELMETYLAEIASDRNI 342


>At3g11720.1 68416.m01437 expressed protein
          Length = 542

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +2

Query: 203 ETSPCDAVSGDFKKDIPELWQKHVANVLQPRNIYSNVSLKSSRTSYLKNTKPSK 364
           ET  C+  S   K+D+PE+ ++   + L+  N  S  S  SS +S     K  K
Sbjct: 333 ETRDCENESVPCKRDVPEIEEEECVDDLKEENKSSPSSSSSSSSSSEDEDKNGK 386


>At2g21490.1 68415.m02557 dehydrin family protein contains Pfam
           domain, PF00257: Dehydrin
          Length = 185

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = +1

Query: 256 AVAEACGKCTPAQKHLFKRFLEVVKDKLP 342
           A A   G  T  Q H  K  LE +KDKLP
Sbjct: 149 ATATTTGPATTDQPHEKKGILEKIKDKLP 177


>At2g25300.1 68415.m03026 galactosyltransferase family protein
           contains Pfam profile: PF01762 galactosyltransferase
          Length = 341

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
 Frame = +2

Query: 128 ENDDLDIEALVGNIDSLK----AFIGCFLETSPCDAVSGDFKKDIPELWQ 265
           +N DLD+E L+G ++S +    A+IGC +++    A  G  K   PE W+
Sbjct: 225 DNIDLDLEGLIGLLESRRGQDAAYIGC-MKSGEVVAEEGG-KWYEPEWWK 272


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,150,970
Number of Sequences: 28952
Number of extensions: 249544
Number of successful extensions: 709
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)