Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0222
         (723 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains...    31   1.0  
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi...    29   3.1  
At2g18540.1 68415.m02160 cupin family protein contains Pfam prof...    29   4.1  
At1g51160.1 68414.m05752 synbindin, putative similar to Swiss-Pr...    29   4.1  
At4g08880.1 68417.m01464 Ulp1 protease family protein contains P...    28   5.5  
At3g59180.1 68416.m06598 hypothetical protein contains a novel d...    28   7.2  
At5g53130.1 68418.m06604 cyclic nucleotide-regulated ion channel...    27   9.5  
At5g37020.1 68418.m04440 auxin-responsive factor (ARF8) identica...    27   9.5  

>At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains
           ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
          Length = 1340

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -1

Query: 588 RRTGRDALLREKCTSSRDVKRFTYRAEENERTKRTFRQHLNARKRTPERKR 436
           R+  R + LRE      + +R   RA + ER +   R+H   R+R  ER+R
Sbjct: 342 RKGDRASYLREFDLREEERRREDQRARDKEREREREREHDRERERQRERER 392


>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
           similarity to unknown protein (ref|NP_005638.1)
          Length = 613

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -1

Query: 567 LLREKCTSSRDVKRFTYRAEENERTKRTFRQHLNARKRTPERKR 436
           +LREK    RD+++   R++EN+  K   R+H   R R  E+ R
Sbjct: 97  MLREKKRKERDMEKERDRSKEND--KGVEREHEGDRNRAKEKDR 138


>At2g18540.1 68415.m02160 cupin family protein contains Pfam profile
           PF00190: Cupin
          Length = 707

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/51 (37%), Positives = 26/51 (50%)
 Frame = -1

Query: 588 RRTGRDALLREKCTSSRDVKRFTYRAEENERTKRTFRQHLNARKRTPERKR 436
           RR   +   R++  + R  +    R EE E T+R  R+   ARKR  ERKR
Sbjct: 445 RRRKEEEEARKREEAKRREEEEAKRREEEE-TERKKREEEEARKREEERKR 494


>At1g51160.1 68414.m05752 synbindin, putative similar to
           Swiss-Prot:Q9ES56 synbindin (TRS23 homolog) [Mus
           musculus]
          Length = 169

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +3

Query: 609 GRPYEFYSFRTRSDRVSFRSTHSDGIIKLITH 704
           G+   F+SFRT + ++SF  T S   I L+TH
Sbjct: 88  GQGCSFHSFRTNTYKLSFMETPSGIKIILVTH 119


>At4g08880.1 68417.m01464 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At3g24380, At5g36840,
           At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
           At2g05560, At1g34730, At1g27790, At1g34740, At1g27780,
           At5g36850, At3g42730, At1g52020, At3g24390, At4g05280,
           At1g25886, At4g03300
          Length = 1463

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -1

Query: 228 SPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTTSPVID 97
           S  P  +   AP TGK+P  R +  G   TRK +     S  +D
Sbjct: 376 SREPPTSMDKAPVTGKKPSRRMSTKGSTGTRKSSRLTRVSHDVD 419


>At3g59180.1 68416.m06598 hypothetical protein contains a novel
           domain with similarity to F-box domain;
          Length = 475

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -3

Query: 307 VIFSLRWSLPPA*GCTLNNPTLRSVPLAATLRRYGP 200
           V+ +L W L     C+++NPTL+ V + + +  Y P
Sbjct: 162 VMINLMWGLMDV--CSVSNPTLKRVTICSEIIDYNP 195


>At5g53130.1 68418.m06604 cyclic nucleotide-regulated ion channel /
           cyclic nucleotide-gated channel (CNGC1) almost identical
           to cyclic nucleotide-regulated ion channel 1 pir:T51354,
           GI:11357236 from [Arabidopsis thaliana]
          Length = 716

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -1

Query: 576 RDALLREKCTSSRDVKRFTYRAEENERTKRTFRQHLNARK-RTPER 442
           +DAL +E C SS  +    Y +       RT R+  + RK R PER
Sbjct: 653 QDALAKEACGSSPSLGATIYASRFAANILRTIRRSGSVRKPRMPER 698


>At5g37020.1 68418.m04440 auxin-responsive factor (ARF8) identical
           to auxin response factor 8 GI:4104931 from [Arabidopsis
           thaliana]
          Length = 811

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 107 PLSIKTTGFSAGLYSCSLAATKEIL 33
           P+S+  +GF   LYSC    T E+L
Sbjct: 668 PMSLTDSGFQNSLYSCMQDTTHELL 692


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,372,416
Number of Sequences: 28952
Number of extensions: 291887
Number of successful extensions: 809
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)