Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0210
         (512 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g10320.1 68418.m01197 expressed protein                             28   3.2  
At1g63110.3 68414.m07131 cell division cycle protein-related con...    28   3.2  
At1g63110.2 68414.m07132 cell division cycle protein-related con...    28   3.2  
At1g63110.1 68414.m07130 cell division cycle protein-related con...    28   3.2  
At3g61680.1 68416.m06912 lipase class 3 family protein contains ...    27   5.6  
At1g18265.1 68414.m02278 expressed protein                             27   5.6  
At3g58360.1 68416.m06505 meprin and TRAF homology domain-contain...    27   7.4  
At2g21530.1 68415.m02562 forkhead-associated domain-containing p...    27   7.4  
At5g43745.1 68418.m05349 phosphotransferase-related similar to s...    27   9.8  

>At5g10320.1 68418.m01197 expressed protein 
          Length = 369

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = -3

Query: 324 YWAINAKCFYDNCNKNEL---HINNTLFLLPFNIKV*NYSFIKLKLEELRVKLSNDFTLI 154
           YWA+  K  +   NKN++    +   + L  F+ +V N    KL+ EE+  +L  DF  I
Sbjct: 204 YWALERKLCHALSNKNKICLEDVMRAIHLKSFDYRVLNLLLYKLRGEEVN-ELHMDFLSI 262


>At1g63110.3 68414.m07131 cell division cycle protein-related
           contains 9 transmembrane domains; similar to PIG-U
           (GI:27372215) [Rattus norvegicus]; similar to Cell
           division cycle protein 91-like 1 (CDC91-like 1 protein)
           (PIG-U) (Swiss-Prot:Q9H490) [Homo sapiens]
          Length = 407

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
 Frame = -3

Query: 429 IIILCVYMLLVYKELS--YKFVYMCIINNSD---QIGINTYWAINAKCFYDNCNKNELHI 265
           ++ILC   L  Y  L   +K  Y  I++  D    IG+  Y+      F+ N     LH+
Sbjct: 215 VLILCALSLNKYGGLEEMFKRTYGFILSIEDLSPNIGVFWYFFAEVFDFFRNFFLIVLHV 274

Query: 264 NNTLFLLPFNIKV 226
           N    LLP  I++
Sbjct: 275 NILFMLLPLAIRL 287


>At1g63110.2 68414.m07132 cell division cycle protein-related
           contains 9 transmembrane domains; similar to PIG-U
           (GI:27372215) [Rattus norvegicus]; similar to Cell
           division cycle protein 91-like 1 (CDC91-like 1 protein)
           (PIG-U) (Swiss-Prot:Q9H490) [Homo sapiens]
          Length = 397

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
 Frame = -3

Query: 429 IIILCVYMLLVYKELS--YKFVYMCIINNSD---QIGINTYWAINAKCFYDNCNKNELHI 265
           ++ILC   L  Y  L   +K  Y  I++  D    IG+  Y+      F+ N     LH+
Sbjct: 205 VLILCALSLNKYGGLEEMFKRTYGFILSIEDLSPNIGVFWYFFAEVFDFFRNFFLIVLHV 264

Query: 264 NNTLFLLPFNIKV 226
           N    LLP  I++
Sbjct: 265 NILFMLLPLAIRL 277


>At1g63110.1 68414.m07130 cell division cycle protein-related
           contains 9 transmembrane domains; similar to PIG-U
           (GI:27372215) [Rattus norvegicus]; similar to Cell
           division cycle protein 91-like 1 (CDC91-like 1 protein)
           (PIG-U) (Swiss-Prot:Q9H490) [Homo sapiens]
          Length = 469

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
 Frame = -3

Query: 429 IIILCVYMLLVYKELS--YKFVYMCIINNSD---QIGINTYWAINAKCFYDNCNKNELHI 265
           ++ILC   L  Y  L   +K  Y  I++  D    IG+  Y+      F+ N     LH+
Sbjct: 277 VLILCALSLNKYGGLEEMFKRTYGFILSIEDLSPNIGVFWYFFAEVFDFFRNFFLIVLHV 336

Query: 264 NNTLFLLPFNIKV 226
           N    LLP  I++
Sbjct: 337 NILFMLLPLAIRL 349


>At3g61680.1 68416.m06912 lipase class 3 family protein contains
           Pfam profile PF01764: Lipase
          Length = 649

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 86  KKFSVRYTEHICMILQSLNGHW-VHP 12
           + FS  Y +H+ ++L+ LNG +  HP
Sbjct: 487 RAFSCNYPDHVALVLKRLNGSFRTHP 512


>At1g18265.1 68414.m02278 expressed protein
          Length = 280

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = -3

Query: 435 FKIIILCVYMLLVYKELSYK--FVYMCIINNSDQIGINTYWAINAKCFYDNCNKNELHIN 262
           F ++ LC  +LL  K LS+K   +++  +   ++I  N  +  +    + +CN N  + N
Sbjct: 37  FNLVFLCCLLLLGLKFLSFKGTSLFLQYLEKINRISPNIEFFNSFNREHKDCNNNNNNNN 96

Query: 261 N 259
           N
Sbjct: 97  N 97


>At3g58360.1 68416.m06505 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein similar to
           ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 298

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 17/82 (20%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
 Frame = -3

Query: 507 KVSPQFNFSVKYCQSLHVTKVRNNFKIIILCVYMLLVY---KELSYKFVYMCIINNSDQI 337
           +++ +  ++++   SLH  K+ ++  I+  C +  LVY     + Y F+Y+ +   +D  
Sbjct: 4   QLAKKITWAIENFSSLHSKKIYSDPFIVGGCKWRFLVYPKGNNVDYLFLYLEV---ADYE 60

Query: 336 GINTYWAINAKCFYDNCNKNEL 271
            ++  W  +A+   +  N+N +
Sbjct: 61  SLSPEWRRHARYLLNVVNQNSV 82


>At2g21530.1 68415.m02562 forkhead-associated domain-containing
           protein / FHA domain-containing protein 
          Length = 209

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 303 CFYDNCNKNELHINNTLFLLPFNIKV*NYSFIKLK 199
           CFY N N+N L+   ++  L  N ++ N SFI  K
Sbjct: 25  CFYGNSNRNNLNGAVSVNCLRENEQISNISFIAKK 59


>At5g43745.1 68418.m05349 phosphotransferase-related similar to
           streptomycin-3'-phosphotransferase [Streptomyces
           griseus] GI:153164
          Length = 817

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 14/60 (23%), Positives = 27/60 (45%)
 Frame = -3

Query: 300 FYDNCNKNELHINNTLFLLPFNIKV*NYSFIKLKLEELRVKLSNDFTLIKAND*RFNKLL 121
           F+ N N+  +  +  LF+ P N K     +  +KLE + V       + +    R +K++
Sbjct: 478 FHPNDNEELMETDKLLFIAPLNWKKKQLLYTDMKLENITVPTDTRKQVFEKKRSRLSKII 537


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,050,537
Number of Sequences: 28952
Number of extensions: 183171
Number of successful extensions: 332
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 332
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)