Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0199
         (436 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g25450.1 68417.m03665 ABC transporter family protein similar ...    28   2.4  
At1g61870.1 68414.m06981 pentatricopeptide (PPR) repeat-containi...    28   3.1  
At5g37020.1 68418.m04440 auxin-responsive factor (ARF8) identica...    27   4.1  
At4g08880.1 68417.m01464 Ulp1 protease family protein contains P...    27   4.1  
At2g06510.2 68415.m00722 replication protein, putative similar t...    27   7.2  
At2g06510.1 68415.m00721 replication protein, putative similar t...    27   7.2  
At1g34315.1 68414.m04258 expressed protein                             27   7.2  
At2g34870.1 68415.m04281 hydroxyproline-rich glycoprotein family...    26   9.5  

>At4g25450.1 68417.m03665 ABC transporter family protein similar to
           multidrug resistance protein 2 SP:P21440 from [Mus
           musculus]
          Length = 714

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 236 RPFGGTLPRLGACHLLRENAPVQDEL 159
           RP+GG  P L  C L    AP +D L
Sbjct: 29  RPYGGLKPFLSFCSLPNSTAPFRDSL 54


>At1g61870.1 68414.m06981 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 408

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +3

Query: 21  KETNQDFLSSGERTGI*PSTESRCFNR*REMWCSGGSAFSSRRLLAKFVLNG 176
           KE  + ++   +  GI P  E+  +NR  +++C  GSA SS  ++A+    G
Sbjct: 168 KEAKRVYIEMPKMYGIEPDLET--YNRMIKVFCESGSASSSYSIVAEMERKG 217


>At5g37020.1 68418.m04440 auxin-responsive factor (ARF8) identical
           to auxin response factor 8 GI:4104931 from [Arabidopsis
           thaliana]
          Length = 811

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 107 PLSIKTTGFSAGLYSCSLAATKEIL 33
           P+S+  +GF   LYSC    T E+L
Sbjct: 668 PMSLTDSGFQNSLYSCMQDTTHELL 692


>At4g08880.1 68417.m01464 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At3g24380, At5g36840,
           At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
           At2g05560, At1g34730, At1g27790, At1g34740, At1g27780,
           At5g36850, At3g42730, At1g52020, At3g24390, At4g05280,
           At1g25886, At4g03300
          Length = 1463

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -2

Query: 225 RHPSAARGLPPSTGKRPRSRRTWPGVVATRKRNLPNTTSPVID 97
           R P  +    P TGK+P  R +  G   TRK +     S  +D
Sbjct: 377 REPPTSMDKAPVTGKKPSRRMSTKGSTGTRKSSRLTRVSHDVD 419


>At2g06510.2 68415.m00722 replication protein, putative similar to
           replication protein A 70kDa [Oryza sativa (japonica
           cultivar-group)] GI:13536993; contains InterPro entry
           IPR004365: OB-fold nucleic acid binding domain
          Length = 617

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 16/76 (21%), Positives = 36/76 (47%)
 Frame = -1

Query: 286 SLPPV*GCILNTPILRSVLSAAPFRG*GLATFYGKTPPFKTNLARSRRDEKAEPPEHHIS 107
           ++PP    + N P+++  ++ AP RG  +      TP F+ ++  S      +PP  + +
Sbjct: 107 NIPPPNRVVFNEPMVQHSVNRAPPRGVNIQNQANNTPSFRPSVQPS-----YQPPASYRN 161

Query: 106 RYRLKQRDSVLGYIPV 59
              + + ++    IP+
Sbjct: 162 HGPIMKNEAPARVIPI 177


>At2g06510.1 68415.m00721 replication protein, putative similar to
           replication protein A 70kDa [Oryza sativa (japonica
           cultivar-group)] GI:13536993; contains InterPro entry
           IPR004365: OB-fold nucleic acid binding domain
          Length = 640

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 16/76 (21%), Positives = 36/76 (47%)
 Frame = -1

Query: 286 SLPPV*GCILNTPILRSVLSAAPFRG*GLATFYGKTPPFKTNLARSRRDEKAEPPEHHIS 107
           ++PP    + N P+++  ++ AP RG  +      TP F+ ++  S      +PP  + +
Sbjct: 130 NIPPPNRVVFNEPMVQHSVNRAPPRGVNIQNQANNTPSFRPSVQPS-----YQPPASYRN 184

Query: 106 RYRLKQRDSVLGYIPV 59
              + + ++    IP+
Sbjct: 185 HGPIMKNEAPARVIPI 200


>At1g34315.1 68414.m04258 expressed protein
          Length = 272

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +1

Query: 229 KGRSLKSGCLECSPKRVVNSI*G*MGTELQFVIMGITGSXCEMLFASH 372
           KG++L++G   C  K    S+   +GT+    + GITGS     F +H
Sbjct: 57  KGKALRNGNFVCVIKE--KSVTTLIGTKFGGALHGITGSIINGAFMTH 102


>At2g34870.1 68415.m04281 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 116

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
 Frame = -3

Query: 377 EKCEANNISXQEPVMPMITNWS----SVPIYP*MEFTTRLGLHSKHPDFKERPFGGTLPR 210
           E   A  ++ Q+P   ++T  +    ++P  P + F     L S  P F   PF G +PR
Sbjct: 22  ETTVARRLTDQKPSDEVVTTTTDEANNLPFPPGLPFGGVPPLPSLFPPFVPSPFPGNIPR 81

Query: 209 L 207
           L
Sbjct: 82  L 82


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,318,522
Number of Sequences: 28952
Number of extensions: 224998
Number of successful extensions: 498
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)