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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0180
         (429 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ...    29   1.8  
At5g42370.1 68418.m05159 expressed protein                             29   1.8  
At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identic...    29   1.8  
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox...    28   2.3  
At5g60000.1 68418.m07524 hypothetical protein                          27   4.1  
At5g22390.1 68418.m02612 expressed protein                             27   4.1  
At3g56510.1 68416.m06284 TBP-binding protein, putative similar t...    27   5.4  
At2g05210.1 68415.m00549 expressed protein                             27   5.4  
At2g03890.2 68415.m00352 phosphatidylinositol 3- and 4-kinase fa...    27   5.4  
At2g03890.1 68415.m00351 phosphatidylinositol 3- and 4-kinase fa...    27   5.4  
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P...    27   7.1  
At3g44430.1 68416.m04774 expressed protein                             27   7.1  
At3g02270.1 68416.m00208 eIF4-gamma/eIF5/eIF2-epsilon domain-con...    27   7.1  
At3g04340.1 68416.m00459 FtsH protease family protein similar to...    26   9.4  
At2g29140.1 68415.m03542 pumilio/Puf RNA-binding domain-containi...    26   9.4  
At1g60230.1 68414.m06783 radical SAM domain-containing protein  ...    26   9.4  

>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
           autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
           Pfam profile PF00899: ThiF family
          Length = 697

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -1

Query: 246 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRR 112
           P  ++G    CG  +V NH++LL +S+ L+      ++S  +R +
Sbjct: 42  PISITGFYGPCGHPQVSNHLTLLSESLPLDEQSLIASTSHGNRNK 86


>At5g42370.1 68418.m05159 expressed protein
          Length = 447

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -2

Query: 185 PFYRIPWNSNAQAEKKTLPGPLGGVFRPL-WVTPSNTR 75
           P Y +  +   Q+ +K +P PL  + R L W TPS  R
Sbjct: 285 PLYDVTSSGLVQSVEKVVPRPLRSIVRLLFWYTPSTMR 322


>At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identical
           to low affinity calcium antiporter CAX2 (GI:1488267)
           [Arabidopsis thaliana]; Ca2+:Cation Antiporter (CaCA)
           Family member PMID:11500563
          Length = 441

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +3

Query: 48  SIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFC--LSVRVPWNPI 179
           S++   SL TS  +  PK P+++   S K  +FC  L++ +P+ P+
Sbjct: 41  SLMEQGSLSTSFPQHTPKAPKNSVLNSIKIVIFCNKLNLLLPFGPL 86


>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
           lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
           [Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
           thaliana]
          Length = 926

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 241 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 143
           +S +  P  R    ++PYLPS    G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247


>At5g60000.1 68418.m07524 hypothetical protein 
          Length = 149

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
 Frame = -2

Query: 335 RGSSPWRPAADMGTNRRDISTYIPHLNFKVRREYPD-TAANAVLFAFRTISPFYRIPWNS 159
           +GS PW+P   +GT  R+    +    + +     D T +    F       FYR  WN+
Sbjct: 78  QGSRPWQPRTCIGTFYREAHFGMHETPYVLYNSDKDATESKNSCFVVVKDDGFYR--WNN 135

Query: 158 NAQAEKKTLP 129
           N +   K  P
Sbjct: 136 NKRIWDKVFP 145


>At5g22390.1 68418.m02612 expressed protein
          Length = 202

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 120 ERSGKSFLFCLSVRVPWNPIEG 185
           + S KSFL  LS   PWNP +G
Sbjct: 17  DNSPKSFLDTLSSSSPWNPSKG 38


>At3g56510.1 68416.m06284 TBP-binding protein, putative similar to
           TBP-binding protein ABT1 GI:6518527 from [Mus musculus]
          Length = 257

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 17/68 (25%), Positives = 28/68 (41%)
 Frame = -2

Query: 212 VLFAFRTISPFYRIPWNSNAQAEKKTLPGPLGGVFRPLWVTPSNTRF*RRGNDY*NGSAA 33
           +L  +  +   Y  P +S AQ  +K   G  G  F   WV  +     +R  D  NG   
Sbjct: 69  ILAQYGELGRIYLAPEDSEAQVHRKRAGGFRGQRFSEGWVEFAKKSVAKRVADMLNGEQI 128

Query: 32  GFRNRNRI 9
           G + ++ +
Sbjct: 129 GGKKKSSV 136


>At2g05210.1 68415.m00549 expressed protein
          Length = 364

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = -3

Query: 241 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPR 86
           +S  T     C+  +E Y   +GF  T TLR+KR     L    S +F  PR
Sbjct: 282 DSTATLEAFLCNKDAE-YFWGLGFQDTETLRKKRNWL--LGIRESSNFVAPR 330


>At2g03890.2 68415.m00352 phosphatidylinositol 3- and 4-kinase
           family protein low similarity to phosphatidylinositol
           4-kinase type-II beta [Homo sapiens] GI:20159767;
           contains Pfam profile PF00454: Phosphatidylinositol 3-
           and 4-kinase
          Length = 530

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -1

Query: 168 MELERSGRKENSSRTSRRRLQATLGYPVEHSFLKTRERLL 49
           MEL+RS    ++  T +RRLQ  L +P E S L   + +L
Sbjct: 60  MELDRS----DNVHTVKRRLQIALNFPTEESSLTYGDMVL 95


>At2g03890.1 68415.m00351 phosphatidylinositol 3- and 4-kinase
           family protein low similarity to phosphatidylinositol
           4-kinase type-II beta [Homo sapiens] GI:20159767;
           contains Pfam profile PF00454: Phosphatidylinositol 3-
           and 4-kinase
          Length = 650

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -1

Query: 168 MELERSGRKENSSRTSRRRLQATLGYPVEHSFLKTRERLL 49
           MEL+RS    ++  T +RRLQ  L +P E S L   + +L
Sbjct: 60  MELDRS----DNVHTVKRRLQIALNFPTEESSLTYGDMVL 95


>At5g56500.1 68418.m07051 chaperonin, putative similar to
           SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
           subunit, chloroplast precursor (60 kDa chaperonin beta
           subunit, CPN-60 beta) [Pisum sativum]; contains
           Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
          Length = 597

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -3

Query: 247 SAESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHF 98
           S  S   PP  R SS     + S  F  T+++ Q++  FP + AA   HF
Sbjct: 10  SMGSSLAPPSNRLSSFVS--ISSSSFGRTQSIAQRKARFPKIYAAKQLHF 57


>At3g44430.1 68416.m04774 expressed protein 
          Length = 206

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 297 YEPARHLHVHPSPEFQGPQRVSGHRRKCG 211
           ++P+R   + PSP F G Q+ S   R+CG
Sbjct: 42  FQPSRI--ISPSPVFNGGQKTSYGGRRCG 68


>At3g02270.1 68416.m00208 eIF4-gamma/eIF5/eIF2-epsilon
           domain-containing protein similar to SP|Q13144
           Translation initiation factor eIF-2B epsilon subunit
           (eIF-2B GDP-GTP exchange factor) {Homo sapiens};
           contains Pfam profile PF02020:
           eIF4-gamma/eIF5/eIF2-epsilon
          Length = 676

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 202 RSEPYLPSIGFHGTRTLRQKRK 137
           R+ PY+P + F G RTL+ +R+
Sbjct: 288 RTFPYVPDMKFSGNRTLKLERQ 309


>At3g04340.1 68416.m00459 FtsH protease family protein similar to
           chloroplast FtsH protease [Arabidopsis thaliana]
           GI:1483215; contains Pfam profiles PF01434: Peptidase
           family M41, PF00004: ATPase AAA family
          Length = 960

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 39  GTVSIIVPSSLKTSVRRGNPKWPEDA 116
           G   ++VP +++  +R G  KW E+A
Sbjct: 81  GEKEVVVPKAIQLHLRHGWKKWQEEA 106


>At2g29140.1 68415.m03542 pumilio/Puf RNA-binding domain-containing
           protein 
          Length = 964

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 21/69 (30%), Positives = 25/69 (36%), Gaps = 3/69 (4%)
 Frame = -2

Query: 413 GPQSQSLFRSYGSNLPTSLTYIILSTRGSS---PWRPAADMGTNRRDISTYIPHLNFKVR 243
           G Q       Y S  P S +Y    T GS+   P  P A  G     +S Y P    +V 
Sbjct: 519 GSQKSQYGLPYKSGSPNSHSYYGSPTFGSNMSYPGSPLAHHGMPNSLMSPYSPMRRGEVN 578

Query: 242 REYPDTAAN 216
             YP    N
Sbjct: 579 MRYPAATRN 587


>At1g60230.1 68414.m06783 radical SAM domain-containing protein
           contains Pfam profile PF04055: radical SAM domain
           protein
          Length = 458

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 133 FPDLSAASSGHFGLPRRTLVFKDEGTIIETVPLP 32
           F D+ +AS G     R+ L   D+G +IETV +P
Sbjct: 161 FKDIRSASDG----TRKILFTLDDGLVIETVVIP 190


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,474,969
Number of Sequences: 28952
Number of extensions: 229178
Number of successful extensions: 678
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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