Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0176
         (605 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial a...    31   0.45 
At3g05780.1 68416.m00649 Lon protease, putative similar to Lon p...    31   0.59 
At3g05790.1 68416.m00650 Lon protease, putative similar to Lon p...    30   1.4  
At4g39330.1 68417.m05568 mannitol dehydrogenase, putative nearly...    29   3.2  
At4g10890.1 68417.m01772 expressed protein                             29   3.2  
At3g17465.1 68416.m02230 ribosomal protein L3 family protein           27   7.3  
At1g11040.1 68414.m01265 DNAJ chaperone C-terminal domain-contai...    27   7.3  

>At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial
           almost identical to Lon protease homolog 2
           mitochondrial precursor SP:P93655, GI:1848290 from
           [Arabidopsis thaliana]
          Length = 940

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = -2

Query: 466 DTDTFAEYIVGEPAF*KTPVQYQNPIAVLFG---ECRGGPTIYVEQIRVLKAG*KCCLNI 296
           D    A+Y VG+P F    +  Q P+ V+ G      GG T+Y+E   V +   K  LNI
Sbjct: 730 DESNLADY-VGKPVFHAEKLYEQTPVGVVMGLAWTSMGGSTLYIETTVVEEGEGKGGLNI 788

Query: 295 S 293
           +
Sbjct: 789 T 789


>At3g05780.1 68416.m00649 Lon protease, putative similar to Lon
           protease homolog 2 SP:P93655
          Length = 924

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = -2

Query: 466 DTDTFAEYIVGEPAF*KTPVQYQNPIAVLFG---ECRGGPTIYVE 341
           D    A+Y VG+P F +  +  Q P+ V+ G      GG T+Y+E
Sbjct: 717 DESNLADY-VGKPVFQEEKIYEQTPVGVVMGLAWTSMGGSTLYIE 760


>At3g05790.1 68416.m00650 Lon protease, putative similar to Lon
           protease homolog 2 SP:P93655
          Length = 942

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = -2

Query: 466 DTDTFAEYIVGEPAF*KTPVQYQNPIAVLFG---ECRGGPTIYVE 341
           D    ++Y VG+P F +  +  Q P+ V+ G      GG T+Y+E
Sbjct: 735 DESNLSDY-VGKPVFQEEKIYEQTPVGVVMGLAWTSMGGSTLYIE 778


>At4g39330.1 68417.m05568 mannitol dehydrogenase, putative nearly
           identical to SP|P42734, probable mannitol dehydrogenase
          Length = 360

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = -2

Query: 271 ISVLFCGFQNSEVMINRDNWGHSYCDV 191
           + +LFCG  ++++   +++WG+SY  V
Sbjct: 42  VKILFCGVCHTDLHTIKNDWGYSYYPV 68


>At4g10890.1 68417.m01772 expressed protein
          Length = 527

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 168 RKTNISESICQRCFHQS-RTKVRGSKAIRYRPSSNRKYVI 52
           ++T I   +C RC+H S R K+R S   R   S++   ++
Sbjct: 194 KQTKICSRVCSRCYHYSMRQKLRHSLHTRILKSNSENAIL 233


>At3g17465.1 68416.m02230 ribosomal protein L3 family protein
          Length = 324

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -1

Query: 113 RKLEVRRRLDTALVLTVNMSSSDPPTLLQWLGGQLPG 3
           RK+  R   D   V  V +   DP   L W+ GQ+PG
Sbjct: 234 RKMAGRMGADQRTVKNVWVYKIDPARNLMWVRGQVPG 270


>At1g11040.1 68414.m01265 DNAJ chaperone C-terminal
           domain-containing protein contains Pfam profile PF01556:
           DnaJ C terminal region
          Length = 438

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +2

Query: 374 TEEHRDRILILNRRFLERRLT--DDILRKRVSITADACTDSAAHKCNTS 514
           +E H D    ++RR+LE +    DD++  R  +   +  DS+  K  +S
Sbjct: 38  SESHSDADSAIHRRYLEEKFAEEDDLIAARRGLRLQSMDDSSVFKRRSS 86


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,582,220
Number of Sequences: 28952
Number of extensions: 221888
Number of successful extensions: 510
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)