Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0163
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62370.1 68416.m07006 expressed protein                             29   2.0  
At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family prot...    29   2.7  
At5g02040.2 68418.m00125 prenylated rab acceptor (PRA1) family p...    28   4.7  
At5g02040.1 68418.m00124 prenylated rab acceptor (PRA1) family p...    28   4.7  
At4g35240.1 68417.m05009 expressed protein contains Pfam domains...    28   4.7  
At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi...    28   6.2  
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-...    27   8.2  
At5g05360.2 68418.m00577 expressed protein similar to unknown pr...    27   8.2  
At5g05360.1 68418.m00578 expressed protein similar to unknown pr...    27   8.2  
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic...    27   8.2  

>At3g62370.1 68416.m07006 expressed protein
          Length = 361

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 577 PDHAGVLNGDERFRHVTTLHAWNKH 503
           P   G  NG +RF H+  ++AWN H
Sbjct: 171 PIDNGEGNGGDRFGHLVDIYAWNPH 195


>At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family protein
           similar to SP|P22418 Fructose-1,6-bisphosphatase,
           chloroplast precursor (EC 3.1.3.11)
           (D-fructose-1,6-bisphosphate 1-phosphohydrolase)
           (FBPase) {Spinacia oleracea}; contains Pfam profile
           PF00316: fructose-1,6-bisphosphatase
          Length = 404

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -3

Query: 387 ATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLD 277
           A+ + SP+N+ L   S  SS  +D   P PL +VS D
Sbjct: 105 ASLVASPFNSSLGKLSVNSSSGSDRDAPKPLDIVSND 141


>At5g02040.2 68418.m00125 prenylated rab acceptor (PRA1) family
           protein contains Pfam PF03208: PRA1 family protein
          Length = 209

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
 Frame = -3

Query: 399 SPTYATPLMSPYN--ARLESSSTGSSFPADSPKPVPLAVVSLDSR*GQWEFVNPFMRVT- 229
           SP  A  +  P     R   SS  +      P+ V +   SL S    W   +  +RV+ 
Sbjct: 110 SPQLAAKMRPPLTPVTRGRPSSKRAIHVCGQPRWVFVLTCSLVSF-ALWYISSGLLRVSV 168

Query: 228 N*MTRHLATLRES*LLPPFTRACLNFFTLTFRALGRNH 115
             +  HLAT+  + L  P  +A  N F   FRA+ RN+
Sbjct: 169 ALLIAHLATILHASLRTPNLKARFNTFREEFRAVWRNY 206


>At5g02040.1 68418.m00124 prenylated rab acceptor (PRA1) family
           protein contains Pfam PF03208: PRA1 family protein
          Length = 209

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
 Frame = -3

Query: 399 SPTYATPLMSPYN--ARLESSSTGSSFPADSPKPVPLAVVSLDSR*GQWEFVNPFMRVT- 229
           SP  A  +  P     R   SS  +      P+ V +   SL S    W   +  +RV+ 
Sbjct: 110 SPQLAAKMRPPLTPVTRGRPSSKRAIHVCGQPRWVFVLTCSLVSF-ALWYISSGLLRVSV 168

Query: 228 N*MTRHLATLRES*LLPPFTRACLNFFTLTFRALGRNH 115
             +  HLAT+  + L  P  +A  N F   FRA+ RN+
Sbjct: 169 ALLIAHLATILHASLRTPNLKARFNTFREEFRAVWRNY 206


>At4g35240.1 68417.m05009 expressed protein contains Pfam domains,
           PF04782: Protein of unknown function (DUF632) and
           PF04783: Protein of unknown function (DUF630)
          Length = 828

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -3

Query: 390 YATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSR*GQWEFVNPF 241
           Y+ P+  P      SSS  ++  A  P P P +      R   W+F+NPF
Sbjct: 239 YSNPVPGPGPGYYGSSSASTTAAATKPPPPPPS----PPRSNGWDFLNPF 284


>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
           like protein A, Arabidopsis thaliana, gb:Q07970
          Length = 790

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 481 DRAPLPPNRVSNETMKVVVFQRRSRET 401
           +RAPLP   V  E +  + F +R +ET
Sbjct: 7   NRAPLPSPNVKKEALSSIPFDKRRKET 33


>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
           GTP-binding protein GUF1 - Saccharomyces cerevisiae,
           PIR:S50374
          Length = 661

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -2

Query: 508 KHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCYTSHV 371
           +H  PA +I+R P PP  +S   +++++F     E    +CY S V
Sbjct: 234 EHVLPA-VIERIPPPPG-ISESPLRMLLFDSFFNEYKGVICYVSVV 277


>At5g05360.2 68418.m00577 expressed protein similar to unknown
           protein (pir||T02500)
          Length = 153

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 472 PLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 362
           P  P+R S      V  ++ +R+T SHL Y++ V L+
Sbjct: 20  PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56


>At5g05360.1 68418.m00578 expressed protein similar to unknown
           protein (pir||T02500)
          Length = 163

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 472 PLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 362
           P  P+R S      V  ++ +R+T SHL Y++ V L+
Sbjct: 20  PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56


>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
           to gi_11935088_gb_AAG41964
          Length = 209

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -3

Query: 399 SPTYATPLMSPYNARLESSSTGSSFPADSPK-PVPLA 292
           SPT +  + SP  A  ++ +  +S P +SPK P P++
Sbjct: 41  SPTKSPAVTSPTTAPAKTPTASASSPVESPKSPAPVS 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,759,154
Number of Sequences: 28952
Number of extensions: 312858
Number of successful extensions: 904
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)