Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0155
         (682 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote...    29   3.8  
At1g77240.1 68414.m08996 AMP-binding protein, putative strong si...    29   3.8  
At3g62370.1 68416.m07006 expressed protein                             28   6.6  
At1g64340.1 68414.m07291 hypothetical protein                          28   6.6  
At1g21695.1 68414.m02716 hydroxyproline-rich glycoprotein family...    28   6.6  
At3g57050.3 68416.m06352 cystathionine beta-lyase, chloroplast /...    27   8.7  
At3g57050.2 68416.m06351 cystathionine beta-lyase, chloroplast /...    27   8.7  
At3g57050.1 68416.m06350 cystathionine beta-lyase, chloroplast /...    27   8.7  

>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
           beta-ketoacyl-CoA synthase - Simmondsia
           chinensis,PID:g1045614
          Length = 451

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 478 RAKAGLIQMFSTHRDCESTAYRSFSIK 398
           RAK  L+Q+  TH+  E T+Y+S  ++
Sbjct: 291 RAKYQLMQLVRTHKGMEDTSYKSIELR 317


>At1g77240.1 68414.m08996 AMP-binding protein, putative strong
           similarity to AMP-binding protein GI:1903034 from
           [Brassica napus]; contains Pfam AMP-binding domain
           PF00501
          Length = 545

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +1

Query: 547 VPPQSNSPPGSVLE-PDHAGVLNGDE-RFRHVTTLHAWNET 663
           +P  SNS P +VL   + A  + GD     H TT+H W+ET
Sbjct: 5   LPHASNSCPLTVLGFLERAASVFGDSPSLLHTTTVHTWSET 45


>At3g62370.1 68416.m07006 expressed protein
          Length = 361

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +1

Query: 562 NSPPGSVL--EPDHAGVLNGDERFRHVTTLHAWN 657
           N+ PG +    P   G  NG +RF H+  ++AWN
Sbjct: 160 NAIPGRLYGGNPIDNGEGNGGDRFGHLVDIYAWN 193


>At1g64340.1 68414.m07291 hypothetical protein
          Length = 265

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = -1

Query: 436 DCESTAYRSFSIKSF*QEVPEKLPQG*LACGSQAFIATLPFDPSMSALPIIAKQNSPS 263
           DCEST Y SF + SF +++   +        S   +++ P  PS +      KQ SP+
Sbjct: 124 DCESTLYDSFELNSFNRQLNSAISSS-ARSMSMPHLSSPP-PPSETTSSSTKKQQSPT 179


>At1g21695.1 68414.m02716 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 217

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/63 (25%), Positives = 27/63 (42%)
 Frame = +3

Query: 6   STVSISLPDSARLASALEAFRHNPADGSFAPPAARRVHEPNVRNCGSSRTEQYYYRNDKP 185
           ST   + P  +  +S     R  P    FAPP + ++  P+  +   S +   Y+R+  P
Sbjct: 52  STPPSNSPSPSSSSSFFSESRSRPVS-PFAPPPSFKLKSPSDSDSNCSASPTPYFRSSSP 110

Query: 186 SVG 194
             G
Sbjct: 111 RAG 113


>At3g57050.3 68416.m06352 cystathionine beta-lyase, chloroplast /
           beta-cystathionase / cysteine lyase (CBL) identical to
           SP|P53780 Cystathionine beta-lyase, chloroplast
           precursor (EC 4.4.1.8) (CBL) (Beta-cystathionase)
           (Cysteine lyase) {Arabidopsis thaliana}
          Length = 378

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = +3

Query: 474 ALLLHARFLSSLAGLRTPALFFDRCTAPV---KLPAWQCPRTGSRGSFK 611
           +L LH+ F+ S A L    L        V   K+P W+  +  +R SFK
Sbjct: 4   SLSLHSSFVPSFADLSDRGLISKNSPTSVSISKVPTWEKKQISNRNSFK 52


>At3g57050.2 68416.m06351 cystathionine beta-lyase, chloroplast /
           beta-cystathionase / cysteine lyase (CBL) identical to
           SP|P53780 Cystathionine beta-lyase, chloroplast
           precursor (EC 4.4.1.8) (CBL) (Beta-cystathionase)
           (Cysteine lyase) {Arabidopsis thaliana}
          Length = 449

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = +3

Query: 474 ALLLHARFLSSLAGLRTPALFFDRCTAPV---KLPAWQCPRTGSRGSFK 611
           +L LH+ F+ S A L    L        V   K+P W+  +  +R SFK
Sbjct: 4   SLSLHSSFVPSFADLSDRGLISKNSPTSVSISKVPTWEKKQISNRNSFK 52


>At3g57050.1 68416.m06350 cystathionine beta-lyase, chloroplast /
           beta-cystathionase / cysteine lyase (CBL) identical to
           SP|P53780 Cystathionine beta-lyase, chloroplast
           precursor (EC 4.4.1.8) (CBL) (Beta-cystathionase)
           (Cysteine lyase) {Arabidopsis thaliana}
          Length = 464

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = +3

Query: 474 ALLLHARFLSSLAGLRTPALFFDRCTAPV---KLPAWQCPRTGSRGSFK 611
           +L LH+ F+ S A L    L        V   K+P W+  +  +R SFK
Sbjct: 4   SLSLHSSFVPSFADLSDRGLISKNSPTSVSISKVPTWEKKQISNRNSFK 52


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,525,929
Number of Sequences: 28952
Number of extensions: 332004
Number of successful extensions: 827
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)