Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0127
         (599 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g23530.1 68416.m02961 cyclopropane fatty acid synthase, putat...    28   4.1  
At1g67970.1 68414.m07764 heat shock factor protein, putative (HS...    28   5.4  
At1g06460.1 68414.m00684 31.2 kDa small heat shock family protei...    27   7.2  
At3g29600.1 68416.m03720 hypothetical protein                          27   9.5  
At1g35510.1 68414.m04407 expressed protein contains Pfam PF03138...    27   9.5  

>At3g23530.1 68416.m02961 cyclopropane fatty acid synthase, putative
           / CPA-FA synthase, putative similar to cyclopropane
           synthase [Sterculia foetida] GI:21069167; contains Pfam
           profiles PF02353: Cyclopropane-fatty-acyl-phospholipid
           synthase, PF01593: amine oxidase, flavin-containing
          Length = 867

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 462 IQNARRDVEAHLDRGDDAIGFFLNTCITAPKSGYNS 569
           +  ARR++  H D  ++  GFFL+  +T   + + S
Sbjct: 569 LTQARRNISRHYDLSNELFGFFLDDTMTYSSAVFKS 604


>At1g67970.1 68414.m07764 heat shock factor protein, putative (HSF5)
           / heat shock transcription factor, putative (HSTF5)
           identical to heat shock transcription factor 5 (HSF5)
           SP:Q9S7U5 from [Arabidopsis thaliana]; contains Pfam
           profile: PF00447 HSF-type DNA-binding domain
          Length = 374

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 311 GRWCELPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCD 442
           G W +L         +K + ++ + GKD LT+E  E  G+ + D
Sbjct: 286 GAWEKLLLLSPSRKKTKKQENIVKKGKDDLTLEEEEEDGTMELD 329


>At1g06460.1 68414.m00684 31.2 kDa small heat shock family protein /
           hsp20 family protein contains Pfam profile: PF00011
           Hsp20/alpha crystallin family
          Length = 285

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 360 RPKPA*PNPARICSLWSPESREALNNVTLLVAFRIQNAR-RDVEAHLD 500
           RPK   P  A + ++WSP S  A +  + +VA  +  A   D+   +D
Sbjct: 169 RPKLDLPKLANLGTVWSPRSNVAESTHSYVVAIELPGASINDIRVEVD 216


>At3g29600.1 68416.m03720 hypothetical protein
          Length = 164

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -3

Query: 312 PLGRVHEPNVRNCGSSRTERIT--IATTSHQ*GKTNLSHDGL 193
           PL     P+  + GS RT++ +  I  +SH+ G+T+ S DG+
Sbjct: 9   PLVGSDRPDRSSDGSDRTDQSSNGIGRSSHETGRTDRSSDGM 50


>At1g35510.1 68414.m04407 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as
           'growth regulator protein -related'  based on similarity
           to axi 1 protein (GB:X80301) (GI:559920) from [Nicotiana
           tabacum], which, due to scienitific fraud was retracted.
           Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908.
           PMID:10400497.
          Length = 568

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 119 ADIEGSKSNVAMNAWLPQ 66
           AD+ GS  NV M AW P+
Sbjct: 122 ADVNGSSHNVLMEAWKPR 139


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,931,604
Number of Sequences: 28952
Number of extensions: 263539
Number of successful extensions: 622
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)