Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0125
         (751 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17920.1 68416.m02282 leucine-rich repeat family protein cont...    29   4.4  
At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identica...    29   4.4  
At4g38560.1 68417.m05459 expressed protein                             28   7.6  
At2g07020.1 68415.m00803 protein kinase family protein contains ...    28   7.6  
At1g55840.1 68414.m06404 SEC14 cytosolic factor (SEC14) / phosph...    28   7.6  

>At3g17920.1 68416.m02282 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains, Pfam:PF00560
          Length = 962

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -3

Query: 440 RLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAE 339
           RLLPSL VV+   +P+ +  P S LP + + V E
Sbjct: 84  RLLPSLKVVSSLPSPARDPTPLSLLPFSKLKVLE 117


>At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identical
           to gi_3883128_gb_AAC77827
          Length = 133

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 431 PSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES 324
           PS    A + APSP +NP    P T   V++   ES
Sbjct: 39  PSQSPRATAPAPSPSANPPPSAPTTAPPVSQPPTES 74


>At4g38560.1 68417.m05459 expressed protein
          Length = 521

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 10  SYMLVSKIKPCMSQCKPY*GDTANGSIYQFWFLRSYSVTWITVVILEL 153
           SY + + +   + +     GD A+GS  Q    +SYS+  +  V+LEL
Sbjct: 341 SYKVRASVSSTLQKILDKHGDIASGSKLQSLRTKSYSLETLAAVVLEL 388


>At2g07020.1 68415.m00803 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 228 RPSVDWF*SNKSTHPITGQSSD 163
           RPS+DWF  N+S +  +  SS+
Sbjct: 233 RPSMDWFEDNRSNYATSSSSSE 254


>At1g55840.1 68414.m06404 SEC14 cytosolic factor (SEC14) /
           phosphoglyceride transfer protein similar to
           polyphosphoinositide binding protein SEC14 homolog Ssh1p
           (GB:AAB94598) [Glycine max]; identified in Eur J Biochem
           1998 Dec 1;258(2):402-10 as AtSEC14, characterized by
           functional complementation in S. cerevisiae.
          Length = 325

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 236 KVVNFDDLDNFCRSHGQVPATHLSN 310
           K+++++ L +FCR  G     H+SN
Sbjct: 231 KIMDYESLPHFCRREGSGSGRHISN 255


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,742,877
Number of Sequences: 28952
Number of extensions: 324036
Number of successful extensions: 782
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)