Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20101
         (590 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g16590.1 68418.m01942 leucine-rich repeat transmembrane prote...    29   2.3  
At3g50140.1 68416.m05481 expressed protein contains Pfam profile...    27   9.4  

>At5g16590.1 68418.m01942 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 625

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -1

Query: 278 FYNITYLYYLYLQSNAISKFLTT*LF 201
           F N+T L YLYLQ NA S  + + LF
Sbjct: 107 FANLTLLRYLYLQGNAFSGEIPSFLF 132


>At3g50140.1 68416.m05481 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 508

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = -3

Query: 348 NILPRKTLELKYYFNFWAYY*SVFL*YNLPILSLF 244
           N+L + TL+ KY+ N WAY+ S F    L +L+LF
Sbjct: 462 NVL-KATLKHKYFSNPWAYF-SFFAAVILLLLTLF 494


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,732,461
Number of Sequences: 28952
Number of extensions: 163488
Number of successful extensions: 222
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)