Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20095
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g53450.2 68414.m06059 expressed protein                             30   1.3  
At1g53450.1 68414.m06058 expressed protein                             30   1.3  
At3g45870.1 68416.m04964 integral membrane family protein / nodu...    28   6.7  
At4g36080.1 68417.m05136 FAT domain-containing protein / phospha...    27   8.8  
At4g34650.1 68417.m04920 farnesyl-diphosphate farnesyltransferas...    27   8.8  

>At1g53450.2 68414.m06059 expressed protein
          Length = 453

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +2

Query: 131 IQVICGCPFSAHKSTF 178
           I +ICGC F+AH STF
Sbjct: 393 INMICGCAFTAHPSTF 408


>At1g53450.1 68414.m06058 expressed protein
          Length = 453

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +2

Query: 131 IQVICGCPFSAHKSTF 178
           I +ICGC F+AH STF
Sbjct: 393 INMICGCAFTAHPSTF 408


>At3g45870.1 68416.m04964 integral membrane family protein / nodulin
           MtN21-related simlar to MtN21 GI:2598575 (root nodule
           development)  Medicago truncatula, EMBL:MTY15293
          Length = 385

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 9/55 (16%)
 Frame = +2

Query: 38  VLCIVGLKCCVALVIAIQ---------QVTPTAFSFFQRTIQVICGCPFSAHKST 175
           VLC++G   C+A  +AIQ          ++ TA+S+F  T+ ++    F  ++ST
Sbjct: 198 VLCLIGNCTCMAAFLAIQAPVLKKYPANLSVTAYSYFFGTMFMVTSAFFMTNEST 252


>At4g36080.1 68417.m05136 FAT domain-containing protein /
            phosphatidylinositol 3- and 4-kinase family protein
            contains Pfam profiles PF00454: Phosphatidylinositol 3-
            and 4-kinase, PF02259: FAT domain, PF02260: FATC domain
          Length = 3839

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +2

Query: 8    SLNLIQYVGTVLCIVGLKCCVALVIAIQQVTPTAFSFFQRTIQV 139
            S  + Q VGTV     L  C+AL   + +VTP   +F Q  +Q+
Sbjct: 1258 SKTIDQQVGTV---TALNFCLALRPPLLKVTPELVNFLQEALQI 1298


>At4g34650.1 68417.m04920 farnesyl-diphosphate farnesyltransferase 2
           / squalene synthase 2 (SQS2) nearly identical to
           GI:2228795; synonomous with farnesyl-diphosphate
           farnesyltransferase, FPP:FPP farnesyltransferase, and
           squalene synthetase
          Length = 378

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
 Frame = -3

Query: 489 IQCLSN-----LPHVSSCLK*MCSLREPFTETNC 403
           +QCL+      L HV  CLK + SLR+P    +C
Sbjct: 255 VQCLNEMVTNALNHVEDCLKSLASLRDPAIFQSC 288


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,302,761
Number of Sequences: 28952
Number of extensions: 218797
Number of successful extensions: 499
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)