Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20083
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15660.1 68418.m01832 F-box family protein contains Pfam PF00...    28   5.4  
At3g23330.1 68416.m02943 pentatricopeptide (PPR) repeat-containi...    28   5.4  
At2g41660.1 68415.m05147 expressed protein contains Pfam profile...    27   7.2  
At1g24090.1 68414.m03039 RNase H domain-containing protein very ...    27   7.2  
At5g11880.1 68418.m01390 diaminopimelate decarboxylase, putative...    27   9.5  
At3g14390.1 68416.m01820 diaminopimelate decarboxylase, putative...    27   9.5  

>At5g15660.1 68418.m01832 F-box family protein contains Pfam
           PF00646: F-box domain
          Length = 438

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = -1

Query: 274 HQGAVVPQPTKYENDVLFFIYNREYNDALKLGRIVDASGDRMAFGHDGEV 125
           H G  +  PT Y ++   F YN + N   K+   V A G + +F     V
Sbjct: 330 HTGEFILAPTSYTDEFYVFHYNPDMNSFRKIR--VQAPGVKFSFAQKASV 377


>At3g23330.1 68416.m02943 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 679

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = +2

Query: 26  KSDHLFHYS*A*SVASDCLERCNEPGEDVRETSYFTIVSKCHTVSRSVHNPTELQSIV 199
           K + LF +S   +VA   +    EPG  +R T    I + CH   + +   TE + IV
Sbjct: 604 KRELLFGHSERLAVAFGIIN--TEPGTTIRVTKNIRICTDCHVAIKFISKITEREIIV 659


>At2g41660.1 68415.m05147 expressed protein contains Pfam profile
           PF04759: Protein of unknown function, DUF617
          Length = 297

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 120 PATSPSCPNAIRSPEASTILPS 185
           P TSP+  + +RSP +S ++PS
Sbjct: 22  PVTSPARSSHVRSPSSSALIPS 43


>At1g24090.1 68414.m03039 RNase H domain-containing protein very low
           similarity to GAG-POL precursor [Oryza sativa (japonica
           cultivar-group)] GI:5902445; contains Pfam profiles
           PF00075: RNase H, PF04134: Protein of unknown function,
           DUF393
          Length = 535

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = +2

Query: 110 VRETSYFTIVSKCHTVSRSVHNPTELQSIVVLAIVDEEQDVVFVLR 247
           V  +S F I S     SRS    +++ S  V++ VD+E+D  FV+R
Sbjct: 43  VAVSSVFGICSVHSYSSRSKAVKSKMLSSTVVSAVDKEKDAFFVVR 88


>At5g11880.1 68418.m01390 diaminopimelate decarboxylase, putative /
           DAP carboxylase, putative similar to diaminopimelate
           decarboxylase [Arabidopsis thaliana] GI:6562332;
           contains Pfam profiles PF02784: Pyridoxal-dependent
           decarboxylase pyridoxal binding domain, PF00278:
           Pyridoxal-dependent decarboxylase C-terminal sheet
           domain
          Length = 489

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 277 HHQGAVVPQPTKYENDVLFFIYNREYNDALKLGRIVDAS 161
           +H GAV+P P    N V   + +R+ N  ++ GR + A+
Sbjct: 315 YHAGAVLPTPMDLINTVRELVLSRDLNLIIEPGRSLIAN 353


>At3g14390.1 68416.m01820 diaminopimelate decarboxylase, putative /
           DAP carboxylase, putative similar to diaminopimelate
           decarboxylase [Arabidopsis thaliana] GI:6562332;
           contains Pfam profiles PF02784: Pyridoxal-dependent
           decarboxylase pyridoxal binding domain, PF00278:
           Pyridoxal-dependent decarboxylase C-terminal sheet
           domain
          Length = 484

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 277 HHQGAVVPQPTKYENDVLFFIYNREYNDALKLGRIVDAS 161
           +H GAV+P P    N V   + +R+ N  ++ GR + A+
Sbjct: 310 YHAGAVLPTPMDLINTVRELVLSRDLNLIIEPGRSLIAN 348


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,658,286
Number of Sequences: 28952
Number of extensions: 225158
Number of successful extensions: 695
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)