Silkworm BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20033
         (729 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g22060.1 68414.m02759 expressed protein                             31   0.59 
At3g23270.1 68416.m02933 regulator of chromosome condensation (R...    30   1.8  
At3g19460.1 68416.m02467 reticulon family protein (RTNLB11) weak...    30   1.8  
At3g28345.1 68416.m03541 ABC transporter family protein similar ...    29   3.2  
At3g12200.1 68416.m01521 protein kinase family protein contains ...    28   5.5  
At5g62660.1 68418.m07864 F-box family protein contains Pfam prof...    28   7.3  
At5g14270.1 68418.m01669 DNA-binding bromodomain-containing prot...    28   7.3  
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ...    27   9.6  
At4g34920.1 68417.m04951 1-phosphatidylinositol phosphodiesteras...    27   9.6  

>At1g22060.1 68414.m02759 expressed protein
          Length = 1999

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = +1

Query: 133  ESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINEGR---VEATSIRYLFTCLVTNRK 303
            E MLDT   +S++  E++ + +   +LSLKF  +  E +   +   ++R     ++ NR 
Sbjct: 1932 EEMLDTKGRYSSMETELREMHDRYSQLSLKFAEVEGERQKLMMTLKNVRASKKAMLLNRS 1991

Query: 304  TS 309
            +S
Sbjct: 1992 SS 1993


>At3g23270.1 68416.m02933 regulator of chromosome condensation
           (RCC1) family protein contains Pfam domain PF00415:
           Regulator of chromosome condensation (RCC1); similar to
           zinc finger protein (GI:15811367) [Arabidopsis
           thaliana]; similar to chromosome condensation regulator
           protein (GI:22770461) [Cicer arietinum]
          Length = 1045

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
 Frame = +3

Query: 387 PWDVNSEGSWVYEKDVLK-ITFPLKQKQPEDSKRPVAEPTETPLRM*VVKRWSSPPRATC 563
           P   N+  S V     LK I FP      +++ +PV  PT TP R  V+   S  P    
Sbjct: 717 PESSNARASQVPSLQQLKDIAFPSSLSAIQNAFKPVVAPTTTPPRTLVIGPSSPSPPPPP 776

Query: 564 GTLTSAWRQPRRPMRSRKCRS 626
            + +   R+P  P  S   RS
Sbjct: 777 RSSSPYARRPSPPRTSGFSRS 797


>At3g19460.1 68416.m02467 reticulon family protein (RTNLB11) weak
           similarity to neuroendocrine-specific protein C [Homo
           sapiens] GI:307311; identical to cDNA RTNLB11
           GI:32331878
          Length = 200

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = -1

Query: 681 IWNRQELRIVSDVDSVRGRFYTFAISLVFWAVSKPTSTSRTLLSVVNSISSRLTF 517
           +W    L I SD+   R       +SLV WA+S   +   +L  V   +   L+F
Sbjct: 106 VWINYVLSIASDITIARNPIRLLQVSLVLWAISYVGTLINSLTLVYIGVLLSLSF 160


>At3g28345.1 68416.m03541 ABC transporter family protein similar to
           P-glycoprotein [Arabidopsis thaliana] GI:3849833;
           contains Pfam profiles PF00005: ABC transporter,
           PF00664: ABC transporter transmembrane region
          Length = 1240

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
 Frame = +3

Query: 108 RPLQSLRSGKHVGHTFALVQ---PCQRNA-TLGQHDEGAVVEVPQHYKRRTRGGDKYQIS 275
           R +Q       +G T  L+       RNA  +     G +VE   H +       +Y   
Sbjct: 534 RVVQEALENASIGRTTILIAHRLSTIRNADVISVVKNGHIVETGSHDELMENIDGQYSTL 593

Query: 276 IHLPGYEQKDINVKAKNG 329
           +HL   E++DINV  K G
Sbjct: 594 VHLQQIEKQDINVSVKIG 611


>At3g12200.1 68416.m01521 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069; contains
           serine/threonine protein kinase domain,
           INTERPRO:IPR002290
          Length = 571

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/41 (41%), Positives = 25/41 (60%)
 Frame = +2

Query: 542 FTTESNVRDVDVGLETAQKTNEIAKV*KRPRTLSTSETMRS 664
           F+ ES +RDVDVG+ +AQ   E+A     PR +  +ET  +
Sbjct: 412 FSEESQLRDVDVGVVSAQ---EVAC--SPPRAIEEAETQEA 447


>At5g62660.1 68418.m07864 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 379

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +3

Query: 525 VVKRWSSPPRATC-GTLTSAWRQPRRPMRSRKCRSDHVRCQHQRRCGVLADSILI*SNIN 701
           V K WSS  R+          + PRRP R      DH+ C     C    +S+L+ S+ +
Sbjct: 64  VSKLWSSLIRSRFFSNCYLTVKTPRRPPRLYMSLVDHLLCNSLMVCHYPCESVLLSSSSS 123

Query: 702 VEN 710
            E+
Sbjct: 124 AES 126


>At5g14270.1 68418.m01669 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 688

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
 Frame = +2

Query: 404 RRQLGLRERRVENHLPAEAKAA-RG*QEASCRAH*DTSTNVSREEMEFTTESNVRDVDVG 580
           R +L L++++ +  L AEAKAA    ++A  +A  + +    R ++E   E+  R   + 
Sbjct: 544 REELELQKKKEKARLQAEAKAAEEARRKAEAQAAAEAAAEAKR-KLELEREA-ARQALME 601

Query: 581 LETAQKTNEIAKV*KRPRTLSTSET 655
           +E + + NE AK  +    L T +T
Sbjct: 602 MEQSVELNENAKFLEDLELLKTVDT 626


>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
           protein KIAA0332 - Homo sapiens, EMBL:AB002330
          Length = 946

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 151 HSLWSNLANEMQHLDNMMKELSLKFP 228
           HS W  + +E +H+ N   E+ +K P
Sbjct: 686 HSTWEEVKSEREHIKNSYAEVEMKEP 711


>At4g34920.1 68417.m04951 1-phosphatidylinositol
           phosphodiesterase-related contains weak similarity to
           1-phosphatidylinositol phosphodiesterase precursor (EC
           3.1.4.10) (Phosphatidylinositol-specific phospholipase
           C) (PI-PLC). (Swiss-Prot:P34024) [Listeria
           monocytogenes]
          Length = 318

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +1

Query: 118 SPYVRESMLDTHSLWSNLANEMQHLDNMMKELSLKF 225
           S Y++++ +DT   W+   + ++HL       S KF
Sbjct: 209 SDYLKDNWIDTDLPWTKFQSNLKHLSEQQPTSSRKF 244


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,217,508
Number of Sequences: 28952
Number of extensions: 336091
Number of successful extensions: 1150
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)