Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30109
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S ... 212 1e-55
At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S ... 207 3e-54
At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A) 207 3e-54
At1g15500.1 68414.m01865 chloroplast ADP, ATP carrier protein, p... 29 1.9
At2g31890.1 68415.m03896 expressed protein 28 3.2
At5g51070.1 68418.m06330 ATP-dependent Clp protease ATP-binding ... 27 5.7
At3g14840.2 68416.m01875 leucine-rich repeat family protein / pr... 27 5.7
At1g80300.1 68414.m09401 chloroplast ADP, ATP carrier protein 1 ... 27 5.7
At4g02640.2 68417.m00359 bZIP transcription factor family protei... 27 7.5
At4g02640.1 68417.m00358 bZIP transcription factor family protei... 27 7.5
At3g23510.1 68416.m02960 cyclopropane fatty acid synthase, putat... 27 9.9
At1g04650.1 68414.m00462 hypothetical protein 27 9.9
>At5g60670.1 68418.m07614 60S ribosomal protein L12 (RPL12C) 60S
RIBOSOMAL PROTEIN L12 (like), Arabidopsis thaliana,
PIR:T45883
Length = 166
Score = 212 bits (517), Expect = 1e-55
Identities = 103/140 (73%), Positives = 122/140 (87%), Gaps = 1/140 (0%)
Frame = +2
Query: 98 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 274
MPPK DP++I V +R GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T+ +WKGL++T
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60
Query: 275 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNR 454
V+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS +DVI IAKIMR R
Sbjct: 61 VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVIEIAKIMRPR 120
Query: 455 SMARXLSGSVKEILGTAQSV 514
S+A+ LSG+VKEILGT SV
Sbjct: 121 SIAKELSGTVKEILGTCVSV 140
>At3g53430.1 68416.m05896 60S ribosomal protein L12 (RPL12B) 60S
RIBOSOMAL PROTEIN L12, Prunus armeniaca,
SWISSPROT:RL12_PRUAR
Length = 166
Score = 207 bits (506), Expect = 3e-54
Identities = 100/140 (71%), Positives = 121/140 (86%), Gaps = 1/140 (0%)
Frame = +2
Query: 98 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 274
MPPK DP++I V +R GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T+ +WKGL++T
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60
Query: 275 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNR 454
V+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS +DV IA+IMR R
Sbjct: 61 VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120
Query: 455 SMARXLSGSVKEILGTAQSV 514
S+A+ LSG+V+EILGT SV
Sbjct: 121 SIAKELSGTVREILGTCVSV 140
>At2g37190.1 68415.m04562 60S ribosomal protein L12 (RPL12A)
Length = 166
Score = 207 bits (506), Expect = 3e-54
Identities = 100/140 (71%), Positives = 121/140 (86%), Gaps = 1/140 (0%)
Frame = +2
Query: 98 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKIT 274
MPPK DP++I V +R GGEVGA SSLAPKIGPLGL+PKK+G+DIAK T+ +WKGL++T
Sbjct: 1 MPPKLDPSQIVDVYVRVTGGEVGAASSLAPKIGPLGLAPKKIGEDIAKETAKEWKGLRVT 60
Query: 275 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNR 454
V+LTVQNRQA++ VVPSAAAL+I+ALKEP RDRKK KNIKHNGNIS +DV IA+IMR R
Sbjct: 61 VKLTVQNRQAKVTVVPSAAALVIKALKEPERDRKKVKNIKHNGNISFDDVTEIARIMRPR 120
Query: 455 SMARXLSGSVKEILGTAQSV 514
S+A+ LSG+V+EILGT SV
Sbjct: 121 SIAKELSGTVREILGTCVSV 140
>At1g15500.1 68414.m01865 chloroplast ADP, ATP carrier protein,
putative / ADP, ATP translocase, putative / adenine
nucleotide translocase, putative strong similarity to
SP|Q39002 Chloroplast ADP,ATP carrier protein 1,
chloroplast precursor (ADP/ATP translocase 1) (Adenine
nucleotide translocase 1) {Arabidopsis thaliana};
contains Pfam profile PF03219: TLC ATP/ADP transporter
Length = 618
Score = 29.1 bits (62), Expect = 1.9
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = -1
Query: 441 IFAIPITSSREMLPLCLIFFCFL 373
IF + +T+ ++++PL L+FFC L
Sbjct: 102 IFGVEVTTLKKIVPLGLMFFCIL 124
>At2g31890.1 68415.m03896 expressed protein
Length = 671
Score = 28.3 bits (60), Expect = 3.2
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +2
Query: 356 EPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRSMA 463
+PP+ RKKQKN K +LED G+ +R R +A
Sbjct: 112 QPPKKRKKQKNSK-----ALEDTEGMDWCVRARKIA 142
>At5g51070.1 68418.m06330 ATP-dependent Clp protease ATP-binding
subunit (ClpD), (ERD1) SAG15/ERD1; identical to ERD1
protein GI:497629, SP:P42762 from [Arabidopsis
thaliana]; contains Pfam profile PF02861: Clp amino
terminal domain
Length = 945
Score = 27.5 bits (58), Expect = 5.7
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 155 GEVGATSSLAPKIGPLGLSPKKVG-DDIAKATSDWKGLKITVQLTVQNR 298
GE+ SSL P G P VG DDIA S W G+ + Q+T R
Sbjct: 570 GELVEESSLPPAAGDD--EPILVGPDDIAAVASVWSGIPVQ-QITADER 615
>At3g14840.2 68416.m01875 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain; contains 2 predicted transmembrane domains
Length = 988
Score = 27.5 bits (58), Expect = 5.7
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Frame = +2
Query: 71 IKLN*VINKMPPKFD--PNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKA 244
++ N + K+PP+ PN ++ N + GE+ +T + + L +S + I
Sbjct: 165 LEYNQLSGKIPPELGNLPNLKRLSNN--LSGEIPSTFAKLTTLTDLRISDNQFTGAIPDF 222
Query: 245 TSDWKGLKITVQLTVQNRQAQIAVVPSAAALI 340
+WKGL+ +L +Q + +PSA L+
Sbjct: 223 IQNWKGLE---KLVIQ-ASGLVGPIPSAIGLL 250
>At1g80300.1 68414.m09401 chloroplast ADP, ATP carrier protein 1 /
ADP, ATP translocase 1 / adenine nucleotide translocase
1 (AATP1) identical to SP|Q39002 Chloroplast ADP,ATP
carrier protein 1, chloroplast precursor (ADP/ATP
translocase 1) (Adenine nucleotide translocase 1)
{Arabidopsis thaliana}
Length = 624
Score = 27.5 bits (58), Expect = 5.7
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = -1
Query: 441 IFAIPITSSREMLPLCLIFFCFL 373
IF + + + ++++PL L+FFC L
Sbjct: 105 IFGVEVATLKKIIPLGLMFFCIL 127
>At4g02640.2 68417.m00359 bZIP transcription factor family protein
contains Pfam profile: PF00170 bZIP transcription
factor; identical to cDNA bZIP protein BZO2H1,
alternatively spliced GI:10954094
Length = 417
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 155 GEVGATSSLAPKIGPLGLSPKKVGDDIAKATSD 253
GE+G TSSL ++ G+S K+V ++ SD
Sbjct: 171 GELGVTSSLPAEVKKTGVSMKQVTSGSSREYSD 203
>At4g02640.1 68417.m00358 bZIP transcription factor family protein
contains Pfam profile: PF00170 bZIP transcription
factor; identical to cDNA bZIP protein BZO2H1,
alternatively spliced GI:10954094
Length = 411
Score = 27.1 bits (57), Expect = 7.5
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 155 GEVGATSSLAPKIGPLGLSPKKVGDDIAKATSD 253
GE+G TSSL ++ G+S K+V ++ SD
Sbjct: 165 GELGVTSSLPAEVKKTGVSMKQVTSGSSREYSD 197
>At3g23510.1 68416.m02960 cyclopropane fatty acid synthase, putative
/ CPA-FA synthase, putative similar to cyclopropane
synthase [Sterculia foetida] GI:21069167; contains Pfam
profile PF02353: Cyclopropane-fatty-acyl-phospholipid
synthase
Length = 867
Score = 26.6 bits (56), Expect = 9.9
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = -3
Query: 397 VFDIFLLFTIT-RRLLKGSDDKGCCRGNNSYLGLSVLNCQLHSDLETLPVTCGLGNVITH 221
+F +FL T+T + SDD+ + L + ++ D E L + CG G +
Sbjct: 586 LFGLFLDDTMTYSSAVFKSDDEDLRTAQMRKISLLIDKARIEKDHEVLEIGCGWGTLAIE 645
Query: 220 LFRR 209
+ RR
Sbjct: 646 VVRR 649
>At1g04650.1 68414.m00462 hypothetical protein
Length = 936
Score = 26.6 bits (56), Expect = 9.9
Identities = 20/94 (21%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Frame = +2
Query: 38 NSSIWI*RYYSIKLN*VINKMPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLG-LSP 214
+S++ + + YS +N +++M + ++ VG V + + LG L+
Sbjct: 141 DSTVRLCKEYSQTVNREVSEMKTSGHVGKARMEEGNAVGNLVSMITLGVKSLSELGMLAA 200
Query: 215 KKVGDDIAKATSDWKGLKITVQLTVQNRQAQIAV 316
+ G+ +A + WKG+ +QL Q +++ V
Sbjct: 201 RDGGNLVAILNTSWKGVITLLQLDKQTLVSKVDV 234
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,684,549
Number of Sequences: 28952
Number of extensions: 238783
Number of successful extensions: 646
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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