Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30066
         (354 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53090.1 68418.m06595 oxidoreductase, putative similar to for...    34   0.031
At3g59770.1 68416.m06670 sacI homology domain-containing protein...    33   0.072
At3g14720.1 68416.m01861 mitogen-activated protein kinase, putat...    30   0.51 
At1g53510.1 68414.m06068 mitogen-activated protein kinase, putat...    28   2.1  
At3g06010.1 68416.m00686 homeotic gene regulator, putative simil...    27   2.7  
At2g28970.1 68415.m03524 leucine-rich repeat protein kinase, put...    27   3.6  
At4g19900.1 68417.m02916 glycosyl transferase-related contains P...    27   4.7  
At2g26780.1 68415.m03212 expressed protein contains Pfam profile...    27   4.7  
At4g39600.1 68417.m05598 kelch repeat-containing F-box family pr...    26   8.3  

>At5g53090.1 68418.m06595 oxidoreductase, putative similar to
           forever young oxidoreductase (FEY3) GI:12004621 from
           [Arabidopsis thaliana]
          Length = 364

 Score = 33.9 bits (74), Expect = 0.031
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = -2

Query: 254 YIREFDGVLPFDFVTNSKEAECTRYFWGXDAVIPQLCKN*XGKDTPVCTF 105
           Y++    ++P+ F+ + +E   +  F   DA IP+ C+    +D PVCTF
Sbjct: 260 YVQVQYALIPY-FIFSPQEGSRSTLFSATDAQIPEHCEKLKTEDKPVCTF 308


>At3g59770.1 68416.m06670 sacI homology domain-containing protein /
           WW domain-containing protein contains Pfam profiles
           PF00397: WW domain, PF02383: SacI homology domain;
           identical to cDNA SAC domain protein 9 (SAC9)
           GI:31415734
          Length = 1630

 Score = 32.7 bits (71), Expect = 0.072
 Identities = 24/77 (31%), Positives = 36/77 (46%)
 Frame = -3

Query: 322 LRRGSRGQLWSQSLINLVAFKAVTSGSSMVSFPLIL*QTRRKQNAPDTFGGXMLSYPNCV 143
           +  GSRG + S      V  +A+   + + SF ++L  TR   + PD  GG  +      
Sbjct: 69  ITNGSRGGVRSS-----VYARAILGYAVLGSFGMLLVATRLNPSIPDLPGGGCVY--TVA 121

Query: 142 KIXWAKTPLYVPLPRQK 92
           +  W K PLY P P+ K
Sbjct: 122 ESQWVKIPLYNPQPQGK 138


>At3g14720.1 68416.m01861 mitogen-activated protein kinase, putative
           / MAPK, putative (MPK19) identical to mitogen-activated
           protein kinase (MAPK)(AtMPK19), PMID:12119167;
          Length = 586

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
 Frame = +3

Query: 69  NANYVRIFFCLGKGTYRGVFAXLIFTQLGYDSIXPPKVSGAF----CFLRVCYKIKGKDT 236
           +AN  RI   +GKG+Y GV    I TQ G + +   K++  F      LR+  ++K    
Sbjct: 9   DANRYRILEVIGKGSY-GVVCAAIDTQTG-EKVAIKKINDVFEHVSDALRILREVKLLRL 66

Query: 237 IELPDVTALKA 269
           +  PD+  +K+
Sbjct: 67  LRHPDIVEIKS 77


>At1g53510.1 68414.m06068 mitogen-activated protein kinase, putative
           / MAPK, putative (MPK18) mitogen-activated protein
           kinase (MAPK)(AtMPK18), PMID:12119167
          Length = 603

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
 Frame = +3

Query: 69  NANYVRIFFCLGKGTYRGVFAXLIFTQLGYDSIXPPKVSGAF----CFLRVCYKIKGKDT 236
           +AN  RI   +GKG+Y GV    I T  G + +   K++  F      LR+  ++K    
Sbjct: 9   DANRYRILEVIGKGSY-GVVCAAIDTHTG-EKVAIKKINDVFEHISDALRILREVKLLRL 66

Query: 237 IELPDVTALKA 269
           +  PD+  +K+
Sbjct: 67  LRHPDIVEIKS 77


>At3g06010.1 68416.m00686 homeotic gene regulator, putative similar to
            SP|P25439 Homeotic gene regulator (Brahma protein)
            {Drosophila melanogaster}; contains Pfam profiles
            PF00271: Helicase conserved C-terminal domain, PF00176:
            SNF2 family N-terminal domain
          Length = 1132

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 19/55 (34%), Positives = 30/55 (54%)
 Frame = -3

Query: 343  FVFGSL*LRRGSRGQLWSQSLINLVAFKAVTSGSSMVSFPLIL*QTRRKQNAPDT 179
            F FGS+  +R  +  ++S +L  L   KAV SG  +    L +   RR++NA +T
Sbjct: 987  FHFGSVTGKRKRKEIVYSDTLSELQWLKAVESGEDLSK--LSMRYNRREENASNT 1039


>At2g28970.1 68415.m03524 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 786

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 156 YDSIXPPKVSGAFCFLRVCYKIKGKDTIELPDVTALKA 269
           YD +  P  S +F ++     I   DT E+P   ALK+
Sbjct: 112 YDRVWYPFFSSSFSYITTSLNINNSDTFEIPK-AALKS 148


>At4g19900.1 68417.m02916 glycosyl transferase-related contains Pfam
            profiles PF01535: PPR repeat, PF04572: Alpha
            1,4-glycosyltransferase conserved region, PF04488:
            Glycosyltransferase sugar-binding region containing DXD
            motif; several hypothetical proteins - Arabidopsis
            thaliana
          Length = 1302

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = -2

Query: 296  LEPIPDKFSGLQGCYIREFDGVLPFDFVTNSKEAECTRYFWGXDAVIPQLCK 141
            L P  + ++ +  CY +E D  L   +  N K   C    +   ++I  LCK
Sbjct: 1130 LIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCK 1181


>At2g26780.1 68415.m03212 expressed protein contains Pfam profile TBP
            (TATA-binding protein) -interacting protein 120 (TIP120);
            contains TIGRFAM profile TIGR01612:  reticulocyte binding
            protein
          Length = 1866

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 177  KVSGAFCFLRVCYKIKGKDTIELPDVTALKATKFIRDWLQS 299
            K+SG  C  ++C +     T  + D++   ATKF+ +   S
Sbjct: 1747 KMSGISCVGKLCSRFPSLWTDSMDDLSPSDATKFVHELFHS 1787


>At4g39600.1 68417.m05598 kelch repeat-containing F-box family
           protein similar to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 367

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 151 NCVKIXWAKTPLYVPLPRQKKI 86
           NC+++   KT  + P+P QK+I
Sbjct: 185 NCIQVFSTKTQTWKPVPFQKRI 206


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,858,746
Number of Sequences: 28952
Number of extensions: 132105
Number of successful extensions: 236
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 449370720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)