Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30060
         (423 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g29033.1 68416.m03629 glycine-rich protein                          30   0.56 
At1g45688.2 68414.m05201 expressed protein                             29   1.3  
At1g45688.1 68414.m05202 expressed protein                             29   1.3  
At4g31880.1 68417.m04531 expressed protein                             29   1.7  
At2g05510.1 68415.m00583 glycine-rich protein                          29   1.7  
At4g22450.1 68417.m03243 hypothetical protein                          28   2.3  
At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) famil...    27   4.0  
At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) famil...    27   6.9  

>At3g29033.1 68416.m03629 glycine-rich protein 
          Length = 167

 Score = 30.3 bits (65), Expect = 0.56
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 243 GFQNRQYDGYQ-NRHANRTGGDGYYGNGDVSEGAH 344
           G+Q    DGYQ N   N  G  GY G G+V+ G +
Sbjct: 95  GYQADYADGYQGNLAGNPPGSGGYQGIGNVNSGGY 129


>At1g45688.2 68414.m05201 expressed protein
          Length = 248

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 94  SPLRSPPFSNSGLGPSFLQSSSLSVTGERRP 2
           SP+ SPP S+S +G    +SSS   +G  +P
Sbjct: 52  SPMGSPPHSHSSMGRHSRESSSSRFSGSLKP 82


>At1g45688.1 68414.m05202 expressed protein
          Length = 342

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 94  SPLRSPPFSNSGLGPSFLQSSSLSVTGERRP 2
           SP+ SPP S+S +G    +SSS   +G  +P
Sbjct: 52  SPMGSPPHSHSSMGRHSRESSSSRFSGSLKP 82


>At4g31880.1 68417.m04531 expressed protein
          Length = 873

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 21/73 (28%), Positives = 28/73 (38%)
 Frame = +1

Query: 202 ADKVVITKTDRTGKDFKTDNMTATKIGMRTVPVATDIMATVTCQKVHITPRTVVSGMEKA 381
           A  V +TK  +TGK  K DN +A K G                 K     +T     +  
Sbjct: 681 ASTVPLTKKAKTGKQSKMDNSSAKK-GSGAGSSKAKATPASKSSKTSQDDKTASKSKDSK 739

Query: 382 TASREDTRDAVEE 420
            ASRE+   + EE
Sbjct: 740 EASREEEASSEEE 752


>At2g05510.1 68415.m00583 glycine-rich protein 
          Length = 127

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 258 QYDGYQNRHANRTGGDGYYGNGDVSEGAHH 347
           Q +GY   H    GG G+YG G    G H+
Sbjct: 39  QPEGYHGGHGGH-GGGGHYGGGGHGHGGHN 67


>At4g22450.1 68417.m03243 hypothetical protein 
          Length = 457

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 255 RQYDGYQNRHANRTGGDGYYGNGDV 329
           +QY+G++    NRT G GYY NG +
Sbjct: 72  KQYEGFKKLTHNRT-GLGYYPNGSI 95


>At3g25150.1 68416.m03140 nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           contains Pfam profile: PF00076 RNA recognition motif.
           (a.k.a. RRM, RBD, or RNP domain); similar to
           ras-GTPase-activating protein (GAP<120>)
           SH3-domain-binding protein 2 GB:NP_035946 [Mus musculus]
          Length = 488

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +3

Query: 237 REGFQNRQYDGYQNRHANRTGGDGYYGNGD 326
           R G+    ++GY N   N  GG     NGD
Sbjct: 420 RGGYGRTDFNGYGNNRGNNRGGYANRANGD 449


>At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           contains Pfam profiles PF02136: Nuclear transport factor
           2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
           RRM, RBD, or RNP domain)
          Length = 428

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +3

Query: 234 NREGFQNRQYDGYQNRHANRTGGDGYYGNGDVSEG 338
           N  G++N   DGY+ R     GG GY  NG    G
Sbjct: 373 NDNGYRN---DGYRPRGNGSNGGRGYGRNGSERRG 404


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,453,257
Number of Sequences: 28952
Number of extensions: 128197
Number of successful extensions: 494
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 655255392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)