Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30052X
         (386 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04220.1 68416.m00446 disease resistance protein (TIR-NBS-LRR...    29   1.1  
At3g19520.1 68416.m02475 expressed protein contains Pfam profile...    27   5.8  

>At3g04220.1 68416.m00446 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 896

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 20/52 (38%), Positives = 30/52 (57%)
 Frame = +1

Query: 34  LVNILYIYFKNNSTYIIICNSSFEREKNLDSLRV*LREGKSLLSSTFGGVTW 189
           L N+  +  +  ST + +  SSF    NL++L   LR+  SLL S+FG VT+
Sbjct: 839 LTNLQVLNLRKCSTLVEL-PSSFVNLTNLENLD--LRDCSSLLPSSFGNVTY 887


>At3g19520.1 68416.m02475 expressed protein contains Pfam profile
           PF04776: Protein of unknown function (DUF626)
          Length = 312

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -1

Query: 155 DFPSLS*TRSESRFFSLSKLELQIIMYVLLFLK 57
           D+PS+    ++ RF+ + K ELQ   ++ L+L+
Sbjct: 168 DWPSVGDLNNQKRFYMVKKCELQSNDWIRLYLE 200


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,282,992
Number of Sequences: 28952
Number of extensions: 78355
Number of successful extensions: 184
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 547638520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)